RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1196438" and tax_phylum = "Candidatus Rifleibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Rifleibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1196438 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20724202 20724202 PRJNA1196438_P_NODE_10317_length_330_cov_1.821012_g9892_i0 PRJNA1196438 10317 330 1.821012 6.0093396 Candidatus Rifleibacteriota bacterium 2053586 Bacteria Bacteria 159 1.1999999999999998e-44   NR MDD3000818.1 2053586 g9892 i0 70.6 0.990909090909091 109 32 99.1 0 329 3 251 359 MDD3000818.1 acetyl-CoA C-acetyltransferase [Candidatus Rifleibacteriota bacterium] diamond 327 159 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota         Candidatus Rifleibacteriota bacterium
27230491 27230491 PRJNA1196438_P_NODE_55803_length_264_cov_2.759162_g55376_i0 PRJNA1196438 55803 264 2.759162 7.28418768 Candidatus Rifleibacteriota bacterium 2053586 Bacteria Bacteria 134 3.95e-36   NR MBR4329697.1 2053586 g55376 i0 97.1 0.772727272727273 68 2 77.3 0 261 58 250 317 MBR4329697.1 phage major capsid protein [Candidatus Rifleibacteriota bacterium] diamond 204 134 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota         Candidatus Rifleibacteriota bacterium
30072382 30072382 PRJNA1196438_P_NODE_20292_length_312_cov_2.987448_g19866_i0 PRJNA1196438 20292 312 2.987448 9.32083776 Candidatus Rifleibacteriota bacterium 2053586 Bacteria Bacteria 56.6 1.08e-6   NR MDD3001892.1 2053586 g19866 i0 54.2 0.913461538461538 48 22 46.2 0 169 312 18 65 MDD3001892.1 hypothetical protein [Candidatus Rifleibacteriota bacterium] diamond 285 56.6 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota         Candidatus Rifleibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;