RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1196438" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1196438 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27723640 27723640 PRJNA1196438_P_NODE_82584_length_228_cov_3.290323_g82157_i0 PRJNA1196438 82584 228 3.290323 7.50193644 root 1 Root_unresolved Root_unresolved 65.9 2.12e-10   NR 7VCF_W 3055 g82157 i0 50 408.210526315789 68 34 89.5 0 3 206 382 449 7VCF_W Chain W, Tic20-Venus-Flag [Chlamydomonas reinhardtii] diamond 93072 66.2 0.995468277945619 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
30641040 30641040 PRJNA1196438_P_NODE_50193_length_273_cov_1.310000_g49766_i0 PRJNA1196438 50193 273 1.31 3.5763 Coccomyxa elongata 1965095 Plants Plants 80.1 3.86e-15   NR CAL8469604.1 1965095 g49766 i0 44.2 1.89010989010989 86 43 94.5 1 265 8 616 696 CAL8469604.1 g9145 [Coccomyxa elongata] diamond 516 80.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa elongata
31336320 31336320 PRJNA1196438_P_NODE_74856_length_243_cov_1.400000_g74429_i0 PRJNA1196438 74856 243 1.4 3.402 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 41.2 0.0366   NR KAF6259096.1 2650976 g74429 i0 55.8 0.530864197530864 43 17 50.6 1 64 186 15 57 KAF6259096.1 hypothetical protein COO60DRAFT_1515373 [Scenedesmus sp. NREL 46B-D3] diamond 129 41.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;