RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1196384" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1196384 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16345647 16345647 PRJNA1196384_S_NODE_1033_length_377_cov_2.026471_g969_i0 PRJNA1196384 1033 377 2.026471 7.63979567 Patiria miniata 46514 Echinodermata other_Eukaryota 138 6.09e-35   NR XP_038071560.1 46514 g969 i0 72.4 2.07692307692308 87 24 69.2 0 377 117 754 840 XP_038071560.1 elongation factor 2-like [Patiria miniata] diamond 783 138 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
28525367 28525367 PRJNA1196384_S_NODE_4907_length_183_cov_1.568493_g4843_i0 PRJNA1196384 4907 183 1.568493 2.87034219 Anneissia japonica 1529436 Echinodermata other_Eukaryota 83.2 9.17e-17   NR XP_033113784.1 1529436 g4843 i0 60 3.67213114754098 55 22 90.2 0 167 3 526 580 XP_033113784.1 advillin-like isoform X2 [Anneissia japonica] diamond 672 83.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
32146268 32146268 PRJNA1196384_S_NODE_1238_length_347_cov_5.048387_g1174_i0 PRJNA1196384 1238 347 5.048387 17.51790289 Metazoa 33208 Echinodermata other_Eukaryota 70.9 3.44e-12   NR XP_071498587.1 105358 g1174 i0 47.9 2.29971181556196 96 39 75.2 3 2 262 118 211 XP_071498587.1 large ribosomal subunit protein eL13-like [Diadema antillarum] diamond 798 70.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;