RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1196384" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1196384 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21999521 21999521 PRJNA1196384_S_NODE_7578_length_156_cov_1.285714_g7514_i0 PRJNA1196384 7578 156 1.285714 2.00571384 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 83.6 2.38e-17   NR OMJ95410.1 5963 g7514 i0 78.7 8.44230769230769 47 10 90.4 0 154 14 141 187 OMJ95410.1 hypothetical protein SteCoe_1171 [Stentor coeruleus] diamond 1317 83.6 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
27483275 27483275 PRJNA1196384_S_NODE_4023_length_198_cov_1.813665_g3959_i0 PRJNA1196384 4023 198 1.813665 3.5910567 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 60.8 1.58e-9   NR CDW83682.1 5949 g3959 i0 58.5 3.48484848484848 53 22 80.3 0 168 10 44 96 CDW83682.1 60s ribosomal protein [Stylonychia lemnae] diamond 690 60.8 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
31494708 31494708 PRJNA1196384_S_NODE_6116_length_168_cov_1.786260_g6052_i0 PRJNA1196384 6116 168 1.78626 3.0009168 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 101 2.1599999999999998e-24   NR KRX09922.1 266149 g6052 i0 72.7 0.982142857142857 55 15 98.2 0 167 3 202 256 KRX09922.1 Lysozyme-like domain [Pseudocohnilembus persalinus] diamond 165 101 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
31766515 31766515 PRJNA1196384_S_NODE_2477_length_247_cov_1.280952_g2413_i0 PRJNA1196384 2477 247 1.280952 3.16395144 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 68.6 2.92e-11   NR KAL4500908.1 2486642 g2413 i0 40.9 4.90688259109312 88 45 98.4 2 243 1 196 283 KAL4500908.1 hypothetical protein ABPG72_020142 [Tetrahymena utriculariae] diamond 1212 68.9 0.995645863570392 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena utriculariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;