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contig_metadata

25 rows where analysis = "diamond", bioproject = "PRJNA1196384" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 25 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1196384 · 25 ✖

analysis 1

  • diamond · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5425948 5425948 PRJNA1196384_S_NODE_805_length_428_cov_3.675192_g741_i0 PRJNA1196384 805 428 3.675192 15.72982176 Metazoa 33208 Chordata Chordata 127 6.249999999999998e-35   NR XP_039259620.1 7725 g741 i0 59 3.23831775700935 117 42 82 1 26 376 1 111 XP_039259620.1 40S ribosomal protein S25-like [Styela clava] diamond 1386 128 0.9921875 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
6700597 6700597 PRJNA1196384_S_NODE_546_length_504_cov_4.218415_g484_i0 PRJNA1196384 546 504 4.218415 21.2608116 Xenopus laevis 8355 Chordata Chordata 205 1.3800000000000002e-64   NR NP_001085759.1 8355 g484 i0 66.4 1.80357142857143 152 49 89.3 1 502 53 8 159 NP_001085759.1 uncharacterized protein LOC444186 [Xenopus laevis] diamond 909 205 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
11801182 11801182 PRJNA1196384_S_NODE_1530_length_315_cov_1.564748_g1466_i0 PRJNA1196384 1530 315 1.564748 4.9289562 Ambystoma mexicanum 8296 Chordata Chordata 95.1 3.53e-20   NR XP_069472948.1 8296 g1466 i0 48.8 1.62857142857143 84 43 80 0 6 257 684 767 XP_069472948.1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 [Ambystoma mexicanum] diamond 513 95.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
11801249 11801249 PRJNA1196384_S_NODE_570_length_496_cov_6.034858_g508_i0 PRJNA1196384 570 496 6.034858 29.93289568 Chordata 7711 Chordata Chordata 243 3.2200000000000003e-79   NR KAK9406484.1 8729 g508 i0 83.1 54.5443548387097 148 25 89.5 0 486 43 35 182 KAK9406484.1 hypothetical protein NXF25_005258 [Crotalus adamanteus] diamond 27054 244 0.995901639344262 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
14351688 14351688 PRJNA1196384_S_NODE_3532_length_209_cov_1.779070_g3468_i0 PRJNA1196384 3532 209 1.77907 3.7182563 Chordata 7711 Chordata Chordata 96.3 2.57e-22   NR NP_001082364.1 8355 g3468 i0 74.1 32.3827751196172 58 15 83.3 0 208 35 202 259 NP_001082364.1 proliferating cell nuclear antigen L homeolog [Xenopus laevis] diamond 6768 96.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
16899872 16899872 PRJNA1196384_S_NODE_874_length_411_cov_4.390374_g810_i0 PRJNA1196384 874 411 4.3903740000000004 18.04443714 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 205 2.67e-65   NR CBY23858.1 34765 g810 i0 76 25.3722627737226 129 31 94.2 0 410 24 19 147 CBY23858.1 unnamed protein product [Oikopleura dioica] diamond 10428 206 0.995145631067961 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
20724118 20724118 PRJNA1196384_S_NODE_817_length_425_cov_4.510309_g753_i0 PRJNA1196384 817 425 4.510309 19.16881325 Opisthokonta 33154 Chordata Chordata 181 8.879999999999998e-55   NR XP_066287101.1 7740 g753 i0 62.4 12.8682352941176 141 53 99.5 0 424 2 34 174 XP_066287101.1 large ribosomal subunit protein uL6-like [Branchiostoma lanceolatum] diamond 5469 182 0.994505494505495 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
26616598 26616598 PRJNA1196384_S_NODE_2181_length_263_cov_1.831858_g2117_i0 PRJNA1196384 2181 263 1.831858 4.81778654 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 57.4 8.96e-8   NR KAI8480781.1 7741 g2117 i0 63 5.79467680608365 46 17 52.5 0 262 125 114 159 KAI8480781.1 40S ribosomal protein S17 [Branchiostoma belcheri] diamond 1524 57.8 0.993079584775087 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
26775122 26775122 PRJNA1196384_S_NODE_8001_length_153_cov_1.327586_g7937_i0 PRJNA1196384 8001 153 1.327586 2.03120658 Chordata 7711 Chordata Chordata 86.7 3.06e-18   NR EMP25425.1 8469 g7937 i0 74.5 53 51 13 100 0 153 1 387 437 EMP25425.1 Beta-centractin [Chelonia mydas] diamond 8109 87.4 0.991990846681922 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
26882781 26882781 PRJNA1196384_S_NODE_541_length_507_cov_4.382979_g479_i0 PRJNA1196384 541 507 4.382979 22.22170353 Protopterus annectens 7888 Chordata Chordata 127 5.06e-34   NR XP_043920879.1 7888 g479 i0 52.4 5.44378698224852 126 59 74 1 1 375 21 146 XP_043920879.1 60S ribosomal protein L14-like isoform X1 [Protopterus annectens] diamond 2760 127 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
26945785 26945785 PRJNA1196384_S_NODE_8342_length_151_cov_1.324561_g8278_i0 PRJNA1196384 8342 151 1.324561 2.00008711 Branchiostoma lanceolatum 7740 Chordata Chordata 45.1 7.9e-4   NR XP_066281823.1 7740 g8278 i0 65.8 3.01986754966887 38 13 75.5 0 149 36 16 53 XP_066281823.1 hematopoietic prostaglandin D synthase-like isoform X2 [Branchiostoma lanceolatum] diamond 456 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
27577967 27577967 PRJNA1196384_S_NODE_7644_length_155_cov_5.635593_g7580_i0 PRJNA1196384 7644 155 5.635593 8.73516915 Bos taurus 9913 Chordata Chordata 39.7 0.0375   NR DAA22930.1 9913 g7580 i0 39.6 0.929032258064516 48 29 92.9 0 2 145 31 78 DAA22930.1 TPA: rCG59649-like [Bos taurus] diamond 144 39.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
28007578 28007578 PRJNA1196384_S_NODE_2925_length_227_cov_2.605263_g2861_i0 PRJNA1196384 2925 227 2.605263 5.91394701 Opisthokonta 33154 Chordata Chordata 128 2.65e-32   NR CAB3240922.1 59560 g2861 i0 74.7 30.726872246696 75 19 99.1 0 227 3 689 763 CAB3240922.1 elongation factor 2-like [Phallusia mammillata] diamond 6975 129 0.992248062015504 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
28133858 28133858 PRJNA1196384_S_NODE_2565_length_242_cov_4.492683_g2501_i0 PRJNA1196384 2565 242 4.492683 10.87229286 Metazoa 33208 Chordata Chordata 80.5 8.96e-18   NR XP_027960623.1 34886 g2501 i0 72.7 3.39669421487603 55 15 68.2 0 1 165 28 82 XP_027960623.1 dedicator of cytokinesis protein 4 isoform X7 [Eumetopias jubatus] diamond 822 81.3 0.990159901599016 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Otariidae Eumetopias Eumetopias jubatus
28323026 28323026 PRJNA1196384_S_NODE_2506_length_245_cov_3.879808_g2442_i0 PRJNA1196384 2506 245 3.879808 9.5055296 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 45.1 0.00561   NR KAB0406966.1 9770 g2442 i0 41.9 1.46938775510204 86 42 95.5 3 234 1 253 338 KAB0406966.1 hypothetical protein E2I00_013280 [Balaenoptera physalus] diamond 360 45.4 0.993392070484582 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
28544375 28544375 PRJNA1196384_S_NODE_6027_length_169_cov_1.606061_g5963_i0 PRJNA1196384 6027 169 1.606061 2.71424309 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.1 8.59e-16   NR NP_001085243.1 8355 g5963 i0 66.7 5.62721893491124 51 17 90.5 0 15 167 327 377 NP_001085243.1 cyclase associated actin cytoskeleton regulatory protein 2 L homeolog [Xenopus laevis] diamond 951 80.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
28702130 28702130 PRJNA1196384_S_NODE_4427_length_190_cov_1.901961_g4363_i0 PRJNA1196384 4427 190 1.901961 3.6137259 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 118 1.15e-30   NR AAI53798.1 8355 g4363 i0 91.8 1.94210526315789 61 5 96.3 0 188 6 109 169 AAI53798.1 LOC100126647 protein [Xenopus laevis] diamond 369 118 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
28828164 28828164 PRJNA1196384_S_NODE_1248_length_346_cov_1.792880_g1184_i0 PRJNA1196384 1248 346 1.79288 6.2033648 Metazoa 33208 Chordata Chordata 78.6 2.26e-15   NR XP_066267136.1 7740 g1184 i0 97.5 18.728323699422 40 1 34.7 0 2 121 146 185 XP_066267136.1 calmodulin-like isoform X1 [Branchiostoma lanceolatum] diamond 6480 78.6 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
28986444 28986444 PRJNA1196384_S_NODE_1508_length_317_cov_3.164286_g1444_i0 PRJNA1196384 1508 317 3.164286 10.03078662 Passeriformes 9126 Chordata Chordata 178 4.55e-54   NR XP_059728636.1 30427 g1444 i0 78.8 124.977917981073 104 22 98.4 0 317 6 48 151 XP_059728636.1 large ribosomal subunit protein uL13 [Haemorhous mexicanus] diamond 39618 179 0.994413407821229 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Haemorhous Haemorhous mexicanus
29914678 29914678 PRJNA1196384_S_NODE_8471_length_150_cov_1.442478_g8407_i0 PRJNA1196384 8471 150 1.442478 2.163717 Xenopus laevis 8355 Chordata Chordata 102 4.44e-27   NR OCT84030.1 8355 g8407 i0 100 0.98 49 0 98 0 149 3 16 64 OCT84030.1 hypothetical protein XELAEV_18022168mg [Xenopus laevis] diamond 147 102 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
29965112 29965112 PRJNA1196384_S_NODE_1891_length_285_cov_3.149194_g1827_i0 PRJNA1196384 1891 285 3.149194 8.9752029 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 128 5.98e-36   NR CAB3265753.1 59560 g1827 i0 79.2 58.3578947368421 72 15 75.8 0 285 70 59 130 CAB3265753.1 40S ribosomal protein S15Aa [Phallusia mammillata] diamond 16632 129 0.992248062015504 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
30325762 30325762 PRJNA1196384_S_NODE_7672_length_155_cov_1.906780_g7608_i0 PRJNA1196384 7672 155 1.90678 2.955509 Xenopus laevis 8355 Chordata Chordata 49.7 3.2e-5   NR XP_041429166.1 8355 g7608 i0 57.4 0.909677419354839 47 20 91 0 154 14 1 47 XP_041429166.1 uncharacterized protein LOC121397098 isoform X1 [Xenopus laevis] diamond 141 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
30533694 30533694 PRJNA1196384_S_NODE_3913_length_200_cov_2.496933_g3849_i0 PRJNA1196384 3913 200 2.496933 4.993866 Chordata 7711 Chordata Chordata 91.3 1.36e-19   NR XP_053316783.1 233779 g3849 i0 58.9 16.11 73 23 99 2 1 198 260 332 XP_053316783.1 ornithine decarboxylase [Spea bombifrons] diamond 3222 91.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Spea Spea bombifrons
32159041 32159041 PRJNA1196384_S_NODE_6938_length_161_cov_1.064516_g6874_i0 PRJNA1196384 6938 161 1.064516 1.71387076 Bufotes viridis 30338 Chordata Chordata 53.1 2.55e-6   NR CAK8629749.1 30338 g6874 i0 75 0.521739130434783 28 7 52.2 0 142 59 335 362 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 84 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
32475495 32475495 PRJNA1196384_S_NODE_5699_length_173_cov_1.404412_g5635_i0 PRJNA1196384 5699 173 1.404412 2.42963276 Xenopus laevis 8355 Chordata Chordata 71.2 7.88e-13   NR AAI53798.1 8355 g5635 i0 64.9 0.988439306358382 57 20 98.8 0 173 3 163 219 AAI53798.1 LOC100126647 protein [Xenopus laevis] diamond 171 71.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;