RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1196384" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1196384 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7976108 7976108 PRJNA1196384_S_NODE_7_length_6103_cov_7.735081_g3_i0 PRJNA1196384 7 6103 7.735081 472.07199343 Bacillus cereus 1396 Bacteria Bacteria 249 1.7799999999999998e-72   NR WP_332277684.1 1396 g3 i0 96 0.0614451908897264 125 5 6.1 0 1719 2093 1 125 WP_332277684.1 hypothetical protein [Bacillus cereus] diamond 375 249 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus
27704630 27704630 PRJNA1196384_S_NODE_1144_length_361_cov_2.271605_g1080_i0 PRJNA1196384 1144 361 2.271605 8.20049405 Bacillus cereus 1396 Bacteria Bacteria 241 3.6400000000000006e-79   NR WP_332277691.1 1396 g1080 i0 99.2 0.988919667590028 119 1 98.9 0 359 3 21 139 WP_332277691.1 terminase large subunit domain-containing protein, partial [Bacillus cereus] diamond 357 241 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus
28367198 28367198 PRJNA1196384_S_NODE_7586_length_156_cov_1.252101_g7522_i0 PRJNA1196384 7586 156 1.252101 1.95327756 Bacillus cereus 1396 Bacteria Bacteria 76.3 5.3e-16   NR WP_277501892.1 1396 g7522 i0 97.3 0.711538461538462 37 1 71.2 0 113 3 1 37 WP_277501892.1 hypothetical protein, partial [Bacillus cereus] diamond 111 76.3 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus
28588521 28588521 PRJNA1196384_S_NODE_4947_length_182_cov_5.013793_g4883_i0 PRJNA1196384 4947 182 5.013793 9.12510326 Enterococcus faecium 1352 Bacteria Bacteria 45.8 1.37e-4   NR PWS22618.1 1352 g4883 i0 76.9 1.81318681318681 26 6 42.9 0 180 103 39 64 PWS22618.1 hypothetical protein DKP78_17450 [Enterococcus faecium] diamond 330 45.8 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium
28967377 28967377 PRJNA1196384_S_NODE_6248_length_167_cov_1.084615_g6184_i0 PRJNA1196384 6248 167 1.084615 1.81130705 Paenibacillus larvae 1464 Bacteria Bacteria 75.9 1.18e-14   NR WP_197336453.1 1464 g6184 i0 52.7 1.97604790419162 55 26 98.8 0 2 166 96 150 WP_197336453.1 hypothetical protein, partial [Paenibacillus larvae] diamond 330 75.9 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus larvae
30167085 30167085 PRJNA1196384_S_NODE_2372_length_251_cov_6.509346_g2308_i0 PRJNA1196384 2372 251 6.509346 16.33845846 Staphylococcus aureus 1280 Bacteria Bacteria 65.5 1.09e-11   NR MCS4580470.1 1280 g2308 i0 100 0.51394422310757 43 0 51.4 0 246 118 1 43 MCS4580470.1 hypothetical protein [Staphylococcus aureus] diamond 129 65.5 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;