RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1196384" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1196384 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29535553 29535553 PRJNA1196384_S_NODE_6170_length_168_cov_0.885496_g6106_i0 PRJNA1196384 6170 168 0.885496 1.48763328 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 106 3.95e-28   NR MEI6568784.1 2026799 g6106 i0 89.3 1 56 6 100 0 168 1 60 115 MEI6568784.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 168 106 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30294029 30294029 PRJNA1196384_S_NODE_7652_length_155_cov_3.059322_g7588_i0 PRJNA1196384 7652 155 3.059322 4.7419491 Phycisphaerales bacterium 2052180 Bacteria Bacteria 51.6 6.63e-6   NR HEX2836960.1 2052180 g7588 i0 55.6 0.870967741935484 45 20 87.1 0 1 135 174 218 HEX2836960.1 DUF4397 domain-containing protein [Phycisphaerales bacterium] diamond 135 51.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
30502175 30502175 PRJNA1196384_S_NODE_7513_length_156_cov_3.042017_g7449_i0 PRJNA1196384 7513 156 3.042017 4.74554652 PVC group 1783257 Bacteria Bacteria 54.3 5.97e-7   NR HNQ22264.1 2026778 g7449 i0 58.7 2.78846153846154 46 18 86.5 1 140 6 118 163 HNQ22264.1 DUF4397 domain-containing protein [Phycisphaerae bacterium] diamond 435 54.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
31431249 31431249 PRJNA1196384_S_NODE_1016_length_380_cov_1.314869_g952_i0 PRJNA1196384 1016 380 1.314869 4.9965022 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 104 1.5199999999999995e-23   NR HLH54161.1 2499141 g952 i0 47.2 1.70526315789474 106 53 81.3 1 5 313 318 423 HLH54161.1 CRTAC1 family protein [Verrucomicrobiia bacterium] diamond 648 104 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;