RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1195551" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1195551 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27388714 27388714 PRJNA1195551_S_NODE_8643_length_311_cov_1.519084_g8290_i0 PRJNA1195551 8643 311 1.519084 4.72435124 Lamellibrachia satsuma 104711 Annelida Annelida 63.9 1.92e-10   NR KAI0218681.1 104711 g8290 i0 44.2 0.742765273311897 77 36 73.3 3 1 228 55 125 KAI0218681.1 Profilin [Lamellibrachia satsuma] diamond 231 63.9 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Siboglinidae Lamellibrachia Lamellibrachia satsuma
28177634 28177634 PRJNA1195551_S_NODE_38426_length_166_cov_0.863248_g38073_i0 PRJNA1195551 38426 166 0.863248 1.43299168 Cossura aciculata 3162496 Annelida Annelida 43.9 0.005   NR XOU09021.1 3162496 g38073 i0 90.9 31.8072289156627 22 2 39.8 0 126 61 201 222 XOU09021.1 cytochrome c oxidase subunit 3 [Cossura aciculata] diamond 5280 43.9 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta   Cossuridae Cossura Cossura aciculata
32632915 32632915 PRJNA1195551_S_NODE_8700_length_310_cov_2.846743_g8347_i0 PRJNA1195551 8700 310 2.846743 8.8249033 Imetescolex patriarchalis 1537933 Annelida Annelida 103 2.3499999999999994e-23   NR XNY95961.1 1537933 g8347 i0 78.1 1.23870967741935 64 12 61.9 1 118 309 498 559 XNY95961.1 NADH dehydrogenase subunit 5 [Imetescolex patriarchalis] diamond 384 103 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Lumbricidae Imetescolex Imetescolex patriarchalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;