RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1195551" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA1195551 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32254150 32254150 PRJNA1195551_S_NODE_2978_length_487_cov_10.436073_g2630_i0 PRJNA1195551 2978 487 10.436073 50.82367551 Prymnesium parvum 97485 Haptophyta other_Eukaryota 104 2.47e-25   NR KAL1514807.1 97485 g2630 i0 44.2 0.696098562628337 113 60 69.6 1 2 340 30 139 KAL1514807.1 hypothetical protein AB1Y20_003893 [Prymnesium parvum] diamond 339 104 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
32884952 32884952 PRJNA1195551_S_NODE_39420_length_164_cov_1.808696_g39067_i0 PRJNA1195551 39420 164 1.808696 2.96626144 Prymnesium parvum 97485 Haptophyta other_Eukaryota 66.6 4.76e-11   NR KAL1524991.1 97485 g39067 i0 73 3.47560975609756 37 10 67.7 0 2 112 930 966 KAL1524991.1 hypothetical protein AB1Y20_019867 [Prymnesium parvum] diamond 570 66.6 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;