RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA1195374" and tax_phylum = "Parabasalia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA1195374 · 15 ✖

analysis 1

  • diamond · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26723760 26723760 PRJNA1195374_P_NODE_44021_length_334_cov_3.203065_g43677_i0 PRJNA1195374 44021 334 3.203065 10.6982371 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 68.6 1.06e-11   NR XP_067772561.1 135588 g43677 i0 44.3 0.709580838323353 79 43 70.1 1 276 43 31 109 XP_067772561.1 transposable element tc3 transposase [Histomonas meleagridis] diamond 237 68.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27420357 27420357 PRJNA1195374_P_NODE_67103_length_261_cov_1.223404_g66759_i0 PRJNA1195374 67103 261 1.223404 3.19308444 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 48.9 3.14e-4   NR XP_001318044.1 412133 g66759 i0 45.5 0.505747126436782 44 24 50.6 0 258 127 197 240 XP_001318044.1 structural constituent of cell wall [Trichomonas vaginalis G3] diamond 132 48.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27641271 27641271 PRJNA1195374_P_NODE_39784_length_354_cov_1.516014_g39440_i0 PRJNA1195374 39784 354 1.516014 5.36668956 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 47.8 0.00207   NR XP_068346703.1 1144522 g39440 i0 34.1 1.40677966101695 91 47 70.3 3 3 251 260 345 XP_068346703.1 uncharacterized protein TRFO_40176 [Tritrichomonas foetus] diamond 498 47.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28272358 28272358 PRJNA1195374_P_NODE_34266_length_385_cov_1.208333_g33922_i0 PRJNA1195374 34266 385 1.208333 4.65208205 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 72.4 7.54e-12   NR XP_068361143.1 1144522 g33922 i0 36.5 0.981818181818182 126 75 98.2 4 3 380 646 766 XP_068361143.1 uncharacterized protein TRFO_23625 [Tritrichomonas foetus] diamond 378 72.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28777619 28777619 PRJNA1195374_P_NODE_35787_length_376_cov_1.267327_g35443_i0 PRJNA1195374 35787 376 1.267327 4.76514952 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 118 3.8000000000000005e-28   NR XP_068363021.1 1144522 g35443 i0 61.5 2.29787234042553 96 37 76.6 0 376 89 446 541 XP_068363021.1 Copine family protein [Tritrichomonas foetus] diamond 864 118 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30059685 30059685 PRJNA1195374_P_NODE_52471_length_302_cov_1.008734_g52127_i0 PRJNA1195374 52471 302 1.008734 3.04637668 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.5 4.19e-8   NR XP_068362900.1 1144522 g52127 i0 42 3.35761589403974 81 35 80.5 2 302 60 193 261 XP_068362900.1 CAMK family protein kinase [Tritrichomonas foetus] diamond 1014 60.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30091218 30091218 PRJNA1195374_P_NODE_67032_length_261_cov_1.250000_g66688_i0 PRJNA1195374 67032 261 1.25 3.2625 root 1 Root_unresolved Root_unresolved 62.8 3.65e-9   NR XP_001313899.1 412133 g66688 i0 38.1 4.44827586206897 84 44 87.4 1 251 24 31 114 XP_001313899.1 spectrin binding [Trichomonas vaginalis G3] diamond 1161 62.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30483237 30483237 PRJNA1195374_P_NODE_83573_length_242_cov_0.911243_g83229_i0 PRJNA1195374 83573 242 0.911243 2.20520806 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 45.8 0.00293   NR XP_001310870.1 412133 g83229 i0 34.7 0.892561983471074 72 45 88 2 3 215 27 97 XP_001310870.1 ribosomal protein S6 kinase family [Trichomonas vaginalis G3] diamond 216 45.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30596814 30596814 PRJNA1195374_P_NODE_80653_length_244_cov_0.900585_g80309_i0 PRJNA1195374 80653 244 0.900585 2.1974274 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 83.6 2.12e-17   NR XP_067772684.1 135588 g80309 i0 47.9 9.47950819672131 71 37 87.3 0 243 31 164 234 XP_067772684.1 Ubiquitin-conjugating enzyme family protein [Histomonas meleagridis] diamond 2313 84.3 0.991696322657177 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30735839 30735839 PRJNA1195374_P_NODE_45614_length_328_cov_1.043137_g45270_i0 PRJNA1195374 45614 328 1.043137 3.42148936 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 2.91e-5   NR XP_068362378.1 1144522 g45270 i0 37.5 0.658536585365854 72 36 57.6 2 324 136 210 281 XP_068362378.1 CAMK family protein kinase [Tritrichomonas foetus] diamond 216 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31842315 31842315 PRJNA1195374_P_NODE_84877_length_241_cov_0.916667_g84533_i0 PRJNA1195374 84877 241 0.916667 2.20916747 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 49.3 1.73e-4   NR XP_068362240.1 1144522 g84533 i0 45.9 1.7551867219917 74 38 92.1 2 224 3 173 244 XP_068362240.1 Kinesin motor domain containing protein [Tritrichomonas foetus] diamond 423 49.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31937258 31937258 PRJNA1195374_P_NODE_69957_length_253_cov_1.283333_g69613_i0 PRJNA1195374 69957 253 1.283333 3.24683249 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 57 3.65e-7   NR XP_067778417.1 135588 g69613 i0 36.6 0.841897233201581 71 45 84.2 0 242 30 164 234 XP_067778417.1 LRR-containing protein [Histomonas meleagridis] diamond 213 57 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
31968949 31968949 PRJNA1195374_P_NODE_85178_length_241_cov_0.916667_g84834_i0 PRJNA1195374 85178 241 0.916667 2.20916747 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 53.1 7.92e-6   NR XP_001310018.1 412133 g84834 i0 44.1 0.734439834024896 59 32 73.4 1 13 189 81 138 XP_001310018.1 surface antigen family [Trichomonas vaginalis G3] diamond 177 53.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32158981 32158981 PRJNA1195374_P_NODE_35298_length_379_cov_1.238562_g34954_i0 PRJNA1195374 35298 379 1.238562 4.69414998 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 102 2.3000000000000003e-22   NR XP_001320325.1 412133 g34954 i0 42.4 1.93931398416887 125 71 98.9 1 3 377 4283 4406 XP_001320325.1 dynein light chain binding [Trichomonas vaginalis G3] diamond 735 102 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32380429 32380429 PRJNA1195374_P_NODE_24799_length_456_cov_1.216710_g24455_i0 PRJNA1195374 24799 456 1.21671 5.5481976 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 45.4 0.0382   NR XP_001319517.1 412133 g24455 i0 48.9 0.309210526315789 47 23 30.9 1 356 216 455 500 XP_001319517.1 antigen BSP-related family [Trichomonas vaginalis G3] diamond 141 45.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;