RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1193541" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1193541 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15623458 15623458 PRJNA1193541_P_NODE_5193_length_371_cov_1.033557_g5055_i0 PRJNA1193541 5193 371 1.033557 3.83449647 Prosthecobacter algae 1144682 Bacteria Bacteria 97.8 8.73e-21   NR WP_345739054.1 1144682 g5055 i0 60.2 5.82210242587601 123 49 99.5 0 369 1 852 974 WP_345739054.1 IPT/TIG domain-containing protein, partial [Prosthecobacter algae] diamond 2160 97.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter algae
27988397 27988397 PRJNA1193541_P_NODE_8185_length_305_cov_1.271552_g8047_i0 PRJNA1193541 8185 305 1.271552 3.8782336 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 44.3 0.0142   NR MEI6341235.1 2026799 g8047 i0 42 0.491803278688525 50 27 47.2 1 124 267 109 158 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 150 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29440457 29440457 PRJNA1193541_P_NODE_11050_length_265_cov_1.557292_g10912_i0 PRJNA1193541 11050 265 1.557292 4.1268238 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 42.7 0.0475   NR MFL6529243.1 2201154 g10912 i0 40.5 0.418867924528302 37 22 41.9 0 116 226 196 232 MFL6529243.1 chromate efflux transporter [Chthoniobacterales bacterium] diamond 111 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
31431162 31431162 PRJNA1193541_P_NODE_8356_length_302_cov_0.951965_g8218_i0 PRJNA1193541 8356 302 0.951965 2.8749343 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 43.9 0.0278   NR MFL6529243.1 2201154 g8218 i0 39 0.814569536423841 41 25 40.7 0 50 172 196 236 MFL6529243.1 chromate efflux transporter [Chthoniobacterales bacterium] diamond 246 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;