RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1193541" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1193541 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27281154 27281154 PRJNA1193541_P_NODE_13063_length_248_cov_0.880000_g12925_i0 PRJNA1193541 13063 248 0.88 2.1824 Rotaria 231623 Rotifera other_Eukaryota 82.4 4.35e-16   NR CAF3791675.1 2762511 g12925 i0 60.7 8.6008064516129 61 24 73.8 0 183 1 1154 1214 CAF3791675.1 unnamed protein product [Rotaria sp. Silwood1] diamond 2133 82.8 0.995169082125604 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1
31715875 31715875 PRJNA1193541_P_NODE_10957_length_266_cov_1.932642_g10819_i0 PRJNA1193541 10957 266 1.932642 5.14082772 Rotaria magnacalcarata 392030 Rotifera other_Eukaryota 49.3 2.15e-4   NR CAF1061026.1 392030 g10819 i0 31.4 0.789473684210526 70 48 78.9 0 7 216 140 209 CAF1061026.1 unnamed protein product [Rotaria magnacalcarata] diamond 210 49.3 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria magnacalcarata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;