RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1193541" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1193541 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28177547 28177547 PRJNA1193541_P_NODE_12066_length_251_cov_0.865169_g11928_i0 PRJNA1193541 12066 251 0.865169 2.17157419 Lacipirellulaceae bacterium 2691534 Bacteria Bacteria 40.4 0.038   NR HVT29968.1 2691534 g11928 i0 72.4 0.346613545816733 29 8 34.7 0 89 3 29 57 HVT29968.1 hypothetical protein [Lacipirellulaceae bacterium] diamond 87 40.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Lacipirellulaceae   Lacipirellulaceae bacterium
28999089 28999089 PRJNA1193541_P_NODE_13748_length_246_cov_0.890173_g13610_i0 PRJNA1193541 13748 246 0.890173 2.18982558 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 129 8.94e-33   NR HLJ09676.1 2026779 g13610 i0 74.4 1 82 21 100 0 1 246 338 419 HLJ09676.1 DUF1592 domain-containing protein [Planctomycetaceae bacterium] diamond 246 129 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
29598313 29598313 PRJNA1193541_P_NODE_9850_length_280_cov_1.487923_g9712_i0 PRJNA1193541 9850 280 1.487923 4.1661844 Isosphaeraceae bacterium 2691532 Bacteria Bacteria 62.4 1.98e-9   NR HWE35819.1 2691532 g9712 i0 69.2 0.417857142857143 39 12 41.8 0 8 124 155 193 HWE35819.1 TetR family transcriptional regulator C-terminal domain-containing protein [Isosphaeraceae bacterium] diamond 117 62.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium
31209347 31209347 PRJNA1193541_P_NODE_13295_length_247_cov_0.885057_g13157_i0 PRJNA1193541 13295 247 0.885057 2.18609079 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 43.5 0.0207   NR MCB9846321.1 2026777 g13157 i0 31.1 0.898785425101215 74 50 88.7 1 7 225 130 203 MCB9846321.1 MFS transporter [Phycisphaeraceae bacterium] diamond 222 43.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;