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contig_metadata

10 rows where analysis = "diamond", bioproject = "PRJNA1188114" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1188114 · 10 ✖

analysis 1

  • diamond · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13073589 13073589 PRJNA1188114_P_NODE_19571_length_161_cov_0.910714_g19519_i0 PRJNA1188114 19571 161 0.910714 1.46624954 Luteolibacter 518753 Bacteria Bacteria 103 1.39e-25   NR MEO7099747.1 1962973 g19519 i0 88.7 5.92546583850932 53 6 98.8 0 1 159 84 136 MEO7099747.1 response regulator transcription factor [Luteolibacter sp.] diamond 954 104 0.990384615384615 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
26787658 26787658 PRJNA1188114_P_NODE_14261_length_165_cov_1.465517_g14209_i0 PRJNA1188114 14261 165 1.465517 2.41810305 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 113 2e-27   NR MDQ6632165.1 2026799 g14209 i0 94.4 4.90909090909091 54 3 98.2 0 163 2 304 357 MDQ6632165.1 DUF1553 domain-containing protein [Verrucomicrobiota bacterium] diamond 810 113 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26914079 26914079 PRJNA1188114_P_NODE_4502_length_212_cov_1.251534_g4450_i0 PRJNA1188114 4502 212 1.251534 2.65325208 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 120 3.689999999999999e-31   NR RYD65414.1 2026800 g4450 i0 77.1 0.990566037735849 70 16 99.1 0 3 212 232 301 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 210 120 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27988377 27988377 PRJNA1188114_P_NODE_16125_length_164_cov_0.886957_g16073_i0 PRJNA1188114 16125 164 0.886957 1.45460948 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 41.6 0.0333   NR MFH1499603.1 2026799 g16073 i0 81 0.384146341463415 21 4 38.4 0 58 120 1 21 MFH1499603.1 O-antigen ligase family protein [Verrucomicrobiota bacterium] diamond 63 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28051448 28051448 PRJNA1188114_P_NODE_10345_length_174_cov_1.112000_g10293_i0 PRJNA1188114 10345 174 1.112 1.93488 Luteolibacter sp. LG18 2819286 Bacteria Bacteria 82.4 7.15e-17   NR WP_338288046.1 2819286 g10293 i0 67.9 1.93103448275862 56 18 96.6 0 5 172 152 207 WP_338288046.1 type II secretion system F family protein [Luteolibacter sp. LG18] diamond 336 82.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
28367095 28367095 PRJNA1188114_P_NODE_6446_length_189_cov_3.100000_g6394_i0 PRJNA1188114 6446 189 3.1 5.859 Synoicihabitans lomoniglobus 2909285 Bacteria Bacteria 89.4 6.84e-19   NR WP_330929723.1 2909285 g6394 i0 59.7 0.984126984126984 62 25 98.4 0 2 187 518 579 WP_330929723.1 endo-1,4-beta-xylanase [Synoicihabitans lomoniglobus] diamond 186 89.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Synoicihabitans Synoicihabitans lomoniglobus
28493621 28493621 PRJNA1188114_P_NODE_14027_length_166_cov_0.871795_g13975_i0 PRJNA1188114 14027 166 0.871795 1.4471797 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 82.8 9.56e-17   NR MFM7102256.1 2026799 g13975 i0 83.6 2.98192771084337 55 9 99.4 0 2 166 406 460 MFM7102256.1 tetratricopeptide repeat protein [Verrucomicrobiota bacterium] diamond 495 82.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29440445 29440445 PRJNA1188114_P_NODE_6610_length_189_cov_1.342857_g6558_i0 PRJNA1188114 6610 189 1.342857 2.53799973 Opitutaceae bacterium 2006848 Bacteria Bacteria 112 7.65e-28   NR HEU5078630.1 2006848 g6558 i0 85.7 1 63 9 100 0 189 1 173 235 HEU5078630.1 Ldh family oxidoreductase [Opitutaceae bacterium] diamond 189 112 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30767478 30767478 PRJNA1188114_P_NODE_9654_length_176_cov_2.173228_g9602_i0 PRJNA1188114 9654 176 2.173228 3.82488128 Opitutus sp. 1913982 Bacteria Bacteria 93.2 1.99e-20   NR HWL15758.1 1913982 g9602 i0 72.4 1.97727272727273 58 16 98.9 0 175 2 236 293 HWL15758.1 MFS transporter [Opitutus sp.] diamond 348 93.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
31399755 31399755 PRJNA1188114_P_NODE_17976_length_162_cov_0.902655_g17924_i0 PRJNA1188114 17976 162 0.902655 1.4623011 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 98.2 7.139999999999999e-23   NR MDB6078283.1 2562705 g17924 i0 81.1 0.981481481481482 53 10 98.1 0 3 161 212 264 MDB6078283.1 LysR family transcriptional regulator [Akkermansiaceae bacterium] diamond 159 98.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;