RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1188114" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1188114 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1594711 1594711 PRJNA1188114_P_NODE_4642_length_210_cov_2.801242_g4590_i0 PRJNA1188114 4642 210 2.801242 5.8826082 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 62 3.67e-9   NR GJG85531.1 2839016 g4590 i0 90.6 0.457142857142857 32 3 45.7 0 206 111 177 208 GJG85531.1 type II secretion system protein F [Gemmatimonadetes bacterium T265] diamond 96 62 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
7973226 7973226 PRJNA1188114_P_NODE_12067_length_167_cov_1.330508_g12015_i0 PRJNA1188114 12067 167 1.330508 2.22194836 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 57 5.38e-8   NR HEX7980228.1 2026741 g12015 i0 53.6 1.0059880239521 56 25 98.8 1 3 167 84 139 HEX7980228.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 168 57 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
18171559 18171559 PRJNA1188114_P_NODE_13095_length_166_cov_1.589744_g13043_i0 PRJNA1188114 13095 166 1.589744 2.63897504 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 104 2.23e-24   NR HEU5261291.1 2448054 g13043 i0 89.1 0.993975903614458 55 6 99.4 0 165 1 210 264 HEU5261291.1 L-glutamate gamma-semialdehyde dehydrogenase [Gemmatimonadales bacterium] diamond 165 104 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29093591 29093591 PRJNA1188114_P_NODE_16868_length_163_cov_0.894737_g16816_i0 PRJNA1188114 16868 163 0.894737 1.45842131 Longimicrobium sp. 2029185 Bacteria Bacteria 103 4.25e-24   NR HLM68793.1 2029185 g16816 i0 88.9 0.993865030674847 54 6 99.4 0 163 2 19 72 HLM68793.1 outer membrane beta-barrel family protein [Longimicrobium sp.] diamond 162 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29901967 29901967 PRJNA1188114_P_NODE_18671_length_162_cov_0.902655_g18619_i0 PRJNA1188114 18671 162 0.902655 1.4623011 Gemmatimonadaceae 219687 Bacteria Bacteria 47.4 2.86e-4   NR WP_284348512.1 2014610 g18619 i0 55.8 1.92592592592593 52 23 96.3 0 158 3 160 211 WP_284348512.1 EAL domain-containing protein [Roseisolibacter agri] diamond 312 47.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
31052081 31052081 PRJNA1188114_P_NODE_15915_length_164_cov_0.886957_g15863_i0 PRJNA1188114 15915 164 0.886957 1.45460948 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 107 1.26e-25   NR HNV77469.1 2026741 g15863 i0 83.3 7.90243902439024 54 9 98.8 0 162 1 64 117 HNV77469.1 prolyl oligopeptidase family serine peptidase [Gemmatimonadaceae bacterium] diamond 1296 107 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32632822 32632822 PRJNA1188114_P_NODE_15640_length_164_cov_0.886957_g15588_i0 PRJNA1188114 15640 164 0.886957 1.45460948 Longimicrobium sp. 2029185 Bacteria Bacteria 109 3.29e-26   NR HYW11784.1 2029185 g15588 i0 94.4 0.98780487804878 54 3 98.8 0 2 163 868 921 HYW11784.1 alpha-2-macroglobulin family protein [Longimicrobium sp.] diamond 162 109 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;