RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1186363" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1186363 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13073191 13073191 PRJNA1186363_P_NODE_11971_length_589_cov_2.360465_g11089_i0 PRJNA1186363 11971 589 2.360465 13.90313885 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 233 1.19e-74   NR XP_013233901.1 5802 g11089 i0 68.2 21.2088285229202 179 54 91.2 1 50 586 1 176 XP_013233901.1 40S ribosomal protein S9, putative [Eimeria tenella] diamond 12492 233 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
21996513 21996513 PRJNA1186363_P_NODE_38438_length_253_cov_0.866667_g37550_i0 PRJNA1186363 38438 253 0.866667 2.19266751 Babesia 5864 SAR_Eukaryotes SAR_Eukaryotes 134 1.95e-37   NR XP_012768418.1 5866 g37550 i0 87.2 4.62450592885375 78 10 92.5 0 1 234 144 221 XP_012768418.1 40S ribosomal protein S5, putative [Babesia bigemina] diamond 1170 135 0.992592592592593 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina
27755001 27755001 PRJNA1186363_P_NODE_28104_length_333_cov_1.365385_g27216_i0 PRJNA1186363 28104 333 1.365385 4.54673205 root 1 Root_unresolved Root_unresolved 214 8.36e-67   NR SBT72045.1 5858 g27216 i0 99.1 702.531531531532 110 1 99.1 0 2 331 177 286 SBT72045.1 polyubiquitin, putative [Plasmodium malariae] diamond 233943 216 0.990740740740741 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium malariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;