RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA1186363" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 13 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1186363 · 13 ✖

analysis 1

  • diamond · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1594381 1594381 PRJNA1186363_P_NODE_23622_length_379_cov_0.797386_g22734_i0 PRJNA1186363 23622 379 0.797386 3.02209294 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 128 7.98e-35   NR MBM3751753.1 2080302 g22734 i0 60.5 4.29023746701847 114 44 90.2 1 352 11 15 127 MBM3751753.1 fasciclin domain-containing protein [Acidimicrobiia bacterium] diamond 1626 128 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
27008845 27008845 PRJNA1186363_P_NODE_12042_length_587_cov_1.815175_g11160_i0 PRJNA1186363 12042 587 1.815175 10.65507725 Rubrobacter sp. 2036010 Bacteria Bacteria 82.4 1.46e-14   NR MBA3474811.1 2036010 g11160 i0 33.6 1.16013628620102 110 67 53.2 2 253 564 315 424 MBA3474811.1 hypothetical protein [Rubrobacter sp.] diamond 681 82.4 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter sp.
28493546 28493546 PRJNA1186363_P_NODE_23227_length_383_cov_1.006452_g22339_i0 PRJNA1186363 23227 383 1.006452 3.85471116 Thermoleophilaceae bacterium 2732252 Bacteria Bacteria 42.7 0.0499   NR HEX2415211.1 2732252 g22339 i0 42.9 0.438642297650131 56 26 39.9 2 66 218 6 60 HEX2415211.1 nuclear transport factor 2 family protein [Thermoleophilaceae bacterium] diamond 168 42.7 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Thermoleophilales Thermoleophilaceae   Thermoleophilaceae bacterium
29049410 29049410 PRJNA1186363_P_NODE_41788_length_246_cov_0.901734_g40900_i0 PRJNA1186363 41788 246 0.901734 2.21826564 Actinomycetota 201174 Bacteria Bacteria 57.8 1.14e-7   NR WP_104480858.1 155976 g40900 i0 53.6 4.08536585365854 56 24 65.9 1 162 1 7 62 WP_104480858.1 peptidoglycan-binding domain-containing protein [Actinokineospora auranticolor] diamond 1005 57.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora auranticolor
29787819 29787819 PRJNA1186363_P_NODE_24291_length_371_cov_1.389262_g23403_i0 PRJNA1186363 24291 371 1.389262 5.15416202 Streptomyces sp. NPDC 1931 Bacteria Bacteria 48.9 1.98e-4   NR WP_399885666.1 3365714 g23403 i0 32.8 0.93800539083558 116 71 93.8 4 18 365 12 120 WP_399885666.1 profilin [Streptomyces sp. NPDC053750] diamond 348 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC053750
30009282 30009282 PRJNA1186363_P_NODE_26411_length_349_cov_1.413043_g25523_i0 PRJNA1186363 26411 349 1.413043 4.93152007 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 52 5.58e-5   NR MDW3177977.1 2080302 g25523 i0 33.3 1.03151862464183 120 70 96.3 5 347 12 141 258 MDW3177977.1 hypothetical protein [Acidimicrobiia bacterium] diamond 360 52 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
30420237 30420237 PRJNA1186363_P_NODE_43733_length_242_cov_0.923077_g42845_i0 PRJNA1186363 43733 242 0.923077 2.23384634 Actinomycetota bacterium 2900548 Bacteria Bacteria 74.3 2.69e-13   NR MDP8938829.1 2900548 g42845 i0 66 2.98760330578512 50 17 62 0 240 91 450 499 MDP8938829.1 F0F1 ATP synthase subunit beta [Actinomycetota bacterium] diamond 723 74.3 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30862180 30862180 PRJNA1186363_P_NODE_37474_length_258_cov_2.108108_g36586_i0 PRJNA1186363 37474 258 2.108108 5.43891864 Ilumatobacteraceae bacterium 2497619 Bacteria Bacteria 64.3 2.08e-11   NR MEQ1700738.1 2497619 g36586 i0 61 1.40697674418605 41 16 47.7 0 87 209 1 41 MEQ1700738.1 hypothetical protein [Ilumatobacteraceae bacterium] diamond 363 64.3 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae   Ilumatobacteraceae bacterium
30881196 30881196 PRJNA1186363_P_NODE_25674_length_356_cov_3.296820_g24786_i0 PRJNA1186363 25674 356 3.29682 11.7366792 Actinomycetes 1760 Bacteria Bacteria 48.1 8.62e-5   NR WP_170213508.1 402297 g24786 i0 55 1.17977528089888 40 9 26.1 1 258 166 1 40 WP_170213508.1 hypothetical protein [Nocardioides daphniae] diamond 420 48.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides daphniae
31355436 31355436 PRJNA1186363_P_NODE_41176_length_247_cov_1.344828_g40288_i0 PRJNA1186363 41176 247 1.344828 3.32172516 root 1 Root_unresolved Root_unresolved 82.8 1.23e-16   NR HYP96687.1 1785 g40288 i0 48.8 7.05668016194332 82 42 99.6 0 2 247 173 254 HYP96687.1 SDR family NAD(P)-dependent oxidoreductase [Mycobacterium sp.] diamond 1743 83.6 0.990430622009569 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp.
31526171 31526171 PRJNA1186363_P_NODE_28596_length_329_cov_1.152344_g27708_i0 PRJNA1186363 28596 329 1.152344 3.79121176 Pseudonocardiaceae bacterium 1873463 Bacteria Bacteria 45.1 0.0149   NR HEU0086506.1 1873463 g27708 i0 30.6 0.656534954407295 72 46 65.7 1 328 113 94 161 HEU0086506.1 phospholipid carrier-dependent glycosyltransferase [Pseudonocardiaceae bacterium] diamond 216 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae   Pseudonocardiaceae bacterium
31893012 31893012 PRJNA1186363_P_NODE_25077_length_363_cov_1.075862_g24189_i0 PRJNA1186363 25077 363 1.075862 3.90537906 Actinomycetes 1760 Bacteria Bacteria 111 9.4e-27   NR WP_229909361.1 1883 g24189 i0 46.1 1.98347107438017 128 61 99.2 2 3 362 81 208 WP_229909361.1 MULTISPECIES: zinc metalloprotease [Streptomyces] diamond 720 112 0.991071428571429 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
32443809 32443809 PRJNA1186363_P_NODE_41199_length_247_cov_1.344828_g40311_i0 PRJNA1186363 41199 247 1.344828 3.32172516 Actinotalea lenta 3064654 Bacteria Bacteria 48.1 5e-4   NR WP_304599511.1 3064654 g40311 i0 38.3 2.58704453441296 81 46 97.2 2 243 4 302 379 WP_304599511.1 hypothetical protein [Actinotalea lenta] diamond 639 48.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Actinotalea Actinotalea lenta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;