RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1182301" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1182301 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15621059 15621059 PRJNA1182301_P_NODE_23033_length_284_cov_3.715640_g22908_i0 PRJNA1182301 23033 284 3.71564 10.5524176 root 1 Root_unresolved Root_unresolved 196 3.44e-59   NR XP_036010302.1 10090 g22908 i0 100 22.8380281690141 94 0 99.3 0 283 2 72 165 XP_036010302.1 uncharacterized protein Gm53410 [Mus musculus] diamond 6486 196 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
21994787 21994787 PRJNA1182301_P_NODE_16298_length_302_cov_2.628821_g16173_i0 PRJNA1182301 16298 302 2.628821 7.93903942 Mus musculus 10090 Chordata Chordata 208 4.7600000000000003e-63   NR NP_001165572.1 10090 g16173 i0 100 0.993377483443709 100 0 99.3 0 1 300 206 305 NP_001165572.1 ribonuclease inhibitor isoform b [Mus musculus] diamond 300 208 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
26660422 26660422 PRJNA1182301_P_NODE_3041_length_506_cov_2.263279_g2917_i0 PRJNA1182301 3041 506 2.263279 11.45219174 Mus musculus 10090 Chordata Chordata 334 7.94e-111   NR NP_001165572.1 10090 g2917 i0 100 0.978260869565217 165 0 97.8 0 3 497 328 492 NP_001165572.1 ribonuclease inhibitor isoform b [Mus musculus] diamond 495 334 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27059746 27059746 PRJNA1182301_P_NODE_16762_length_298_cov_3.315556_g16637_i0 PRJNA1182301 16762 298 3.315556 9.88035688 Metazoa 33208 Chordata Chordata 52.4 1.71e-5   NR XP_010723855.1 9103 g16637 i0 35.1 8.56711409395973 94 56 93.6 3 19 297 36 125 XP_010723855.1 ankyrin repeat and death domain-containing protein 1B-like [Meleagris gallopavo] diamond 2553 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
27262001 27262001 PRJNA1182301_P_NODE_783_length_855_cov_3.079284_g672_i0 PRJNA1182301 783 855 3.079284 26.3278782 Sus scrofa 9823 Chordata Chordata 568 1.7499999999999998e-200   NR XP_020938199.1 9823 g672 i0 100 2.98947368421053 284 0 99.6 0 2 853 168 451 XP_020938199.1 ribonuclease inhibitor isoform X2 [Sus scrofa] diamond 2556 568 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
29598176 29598176 PRJNA1182301_P_NODE_61650_length_242_cov_0.911243_g61525_i0 PRJNA1182301 61650 242 0.911243 2.20520806 Corvus kubaryi 68294 Chordata Chordata 68.6 2.96e-11   NR XP_041892773.1 68294 g61525 i0 49.2 3.53305785123967 63 32 78.1 0 17 205 648 710 XP_041892773.1 eukaryotic translation initiation factor 2-alpha kinase 1 isoform X2 [Corvus kubaryi] diamond 855 68.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Corvus Corvus kubaryi
31652301 31652301 PRJNA1182301_P_NODE_50497_length_250_cov_0.870056_g50372_i0 PRJNA1182301 50497 250 0.870056 2.17514 Acomys russatus 60746 Chordata Chordata 45.8 0.00339   NR XP_051013321.1 60746 g50372 i0 39.4 0.852 71 41 84 2 250 41 413 482 XP_051013321.1 toll-like receptor 2 [Acomys russatus] diamond 213 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Acomys Acomys russatus
32695847 32695847 PRJNA1182301_P_NODE_68040_length_223_cov_4.486667_g67915_i0 PRJNA1182301 68040 223 4.486667 10.00526741 Nyctereutes procyonoides 34880 Chordata Chordata 52 3.22e-6   NR CAD7667071.1 34880 g67915 i0 66.7 0.524663677130045 39 9 52.5 1 106 222 76 110 CAD7667071.1 unnamed protein product [Nyctereutes procyonoides] diamond 117 52 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;