RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1182301" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1182301 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27735951 27735951 PRJNA1182301_P_NODE_23564_length_284_cov_1.355450_g23439_i0 PRJNA1182301 23564 284 1.35545 3.849478 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 96.7 6.790000000000001e-21   NR KAH3755916.1 1580589 g23439 i0 53.9 0.940140845070423 89 41 94 0 269 3 330 418 KAH3755916.1 GPI mannosyltransferase [Pelomyxa schiedti] diamond 267 96.7 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
28303943 28303943 PRJNA1182301_P_NODE_55266_length_246_cov_2.647399_g55141_i0 PRJNA1182301 55266 246 2.647399 6.51260154 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 63.9 1.34e-9   NR XP_004333337.1 1257118 g55141 i0 88.2 0.829268292682927 34 4 41.5 0 102 1 477 510 XP_004333337.1 ABC transporter A family protein [Acanthamoeba castellanii str. Neff] diamond 204 63.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29851205 29851205 PRJNA1182301_P_NODE_37771_length_265_cov_1.401042_g37646_i0 PRJNA1182301 37771 265 1.401042 3.7127613 Heterostelium album PN5 2086695 Evosea other_Eukaryota 42 0.029   NR XP_020429212.1 670386 g37646 i0 47.6 0.475471698113208 42 22 47.5 0 3 128 7 48 XP_020429212.1 hypothetical protein PPL_09836 [Heterostelium album PN500] diamond 126 42 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;