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contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA1180292" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 30 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1180292 · 30 ✖

analysis 1

  • diamond · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5420998 5420998 PRJNA1180292_P_NODE_6765_length_271_cov_1.202020_g6633_i0 PRJNA1180292 6765 271 1.20202 3.2574742 Chordata 7711 Chordata Chordata 181 2.59e-53   NR XP_061433398.1 7753 g6633 i0 94.3 114.088560885609 88 5 97.4 0 1 264 291 378 XP_061433398.1 cAMP-dependent protein kinase catalytic subunit alpha-like isoform X2 [Lethenteron reissneri] diamond 30918 182 0.994505494505495 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
6695711 6695711 PRJNA1180292_P_NODE_12306_length_243_cov_1.705882_g12174_i0 PRJNA1180292 12306 243 1.705882 4.14529326 Chondrichthyes 7777 Chordata Chordata 105 9.15e-28   NR XP_038645752.1 7830 g12174 i0 75 1.59259259259259 64 16 79 0 2 193 24 87 XP_038645752.1 acyl-CoA-binding protein [Scyliorhinus canicula] diamond 387 106 0.990566037735849 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
6695757 6695757 PRJNA1180292_P_NODE_5406_length_300_cov_1.374449_g5274_i0 PRJNA1180292 5406 300 1.374449 4.123347 Opisthokonta 33154 Chordata Chordata 146 2.38e-41   NR XP_039265984.1 7725 g5274 i0 71.7 1.98 99 28 99 0 298 2 96 194 XP_039265984.1 40S ribosomal protein S6-like [Styela clava] diamond 594 146 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
7971116 7971116 PRJNA1180292_P_NODE_2327_length_446_cov_1.469169_g2195_i0 PRJNA1180292 2327 446 1.469169 6.55249374 Metazoa 33208 Chordata Chordata 182 5.839999999999998e-56   NR XP_039266688.1 7725 g2195 i0 64.7 8.43497757847534 139 49 93.5 0 1 417 9 147 XP_039266688.1 60S ribosomal protein L27a-like isoform X1 [Styela clava] diamond 3762 182 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
9969348 9969348 PRJNA1180292_P_NODE_2668_length_416_cov_0.921283_g2536_i0 PRJNA1180292 2668 416 0.921283 3.83253728 Opisthokonta 33154 Chordata Chordata 226 5.22e-66   NR ELK14176.1 9402 g2536 i0 73.9 52.7451923076923 138 36 99.5 0 415 2 66 203 ELK14176.1 Protein DBF4 like protein B [Pteropus alecto] diamond 21942 226 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus alecto
12519929 12519929 PRJNA1180292_P_NODE_5510_length_297_cov_1.705357_g5378_i0 PRJNA1180292 5510 297 1.705357 5.06491029 Chondrichthyes 7777 Chordata Chordata 109 2.01e-25   NR XP_038677746.1 7830 g5378 i0 60.5 20.8585858585859 86 34 86.9 0 295 38 348 433 XP_038677746.1 NAD-dependent protein deacetylase sirtuin-1 isoform X2 [Scyliorhinus canicula] diamond 6195 110 0.990909090909091 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
13071500 13071500 PRJNA1180292_P_NODE_5371_length_301_cov_1.087719_g5239_i0 PRJNA1180292 5371 301 1.087719 3.27403419 Branchiostoma belcheri 7741 Chordata Chordata 152 2.0599999999999993e-40   NR XP_019616963.1 7741 g5239 i0 71.7 3.9468438538206 99 28 98.7 0 3 299 568 666 XP_019616963.1 PREDICTED: elongation factor 2-like [Branchiostoma belcheri] diamond 1188 152 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
16894969 16894969 PRJNA1180292_P_NODE_2514_length_428_cov_0.878873_g2382_i0 PRJNA1180292 2514 428 0.878873 3.76157644 Branchiostoma floridae 7739 Chordata Chordata 188 7.86e-59   NR XP_035667477.1 7739 g2382 i0 77.7 5.92990654205607 121 27 84.8 0 61 423 1 121 XP_035667477.1 40S ribosomal protein S17 [Branchiostoma floridae] diamond 2538 188 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
16895000 16895000 PRJNA1180292_P_NODE_5774_length_290_cov_1.437788_g5642_i0 PRJNA1180292 5774 290 1.437788 4.1695852 Metazoa 33208 Chordata Chordata 117 5.4e-32   NR XP_041042272.1 13397 g5642 i0 58.9 11.1724137931034 90 37 93.1 0 271 2 2 91 XP_041042272.1 thioredoxin-like [Carcharodon carcharias] diamond 3240 118 0.991525423728814 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Lamniformes Alopiidae Carcharodon Carcharodon carcharias
18892753 18892753 PRJNA1180292_P_NODE_3495_length_366_cov_2.518771_g3363_i0 PRJNA1180292 3495 366 2.518771 9.21870186 Metazoa 33208 Chordata Chordata 196 8.04e-59   NR XP_069481112.1 8296 g3363 i0 77.9 62 122 27 100 0 366 1 6 127 XP_069481112.1 large ribosomal subunit protein uL4 [Ambystoma mexicanum] diamond 22692 197 0.99492385786802 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
20719223 20719223 PRJNA1180292_P_NODE_4237_length_336_cov_1.057034_g4105_i0 PRJNA1180292 4237 336 1.057034 3.55163424 Chordata 7711 Chordata Chordata 137 6.63e-35   NR XP_040209456.1 8407 g4105 i0 57.9 52.5625 107 43 95.5 1 14 334 89 193 XP_040209456.1 RNA cytosine C(5)-methyltransferase NSUN2 isoform X1 [Rana temporaria] diamond 17661 138 0.992753623188406 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
27546185 27546185 PRJNA1180292_P_NODE_1524_length_559_cov_72.923868_g1392_i0 PRJNA1180292 1524 559 72.923868 407.64442212 Branchiostoma belcheri 7741 Chordata Chordata 130 7.689999999999998e-35   NR XP_019626026.1 7741 g1392 i0 45.5 1.50805008944544 132 71 70.8 1 483 88 18 148 XP_019626026.1 PREDICTED: epididymal secretory protein E1-like [Branchiostoma belcheri] diamond 843 130 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
27704387 27704387 PRJNA1180292_P_NODE_3804_length_352_cov_1.118280_g3672_i0 PRJNA1180292 3804 352 1.11828 3.9363456 Chinchilla lanigera 34839 Chordata Chordata 43.9 0.0395   NR XP_005399258.2 34839 g3672 i0 35.1 0.485795454545455 57 37 48.6 0 59 229 27 83 XP_005399258.2 PREDICTED: uncharacterized protein LOC102025102 [Chinchilla lanigera] diamond 171 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Chinchillidae Chinchilla Chinchilla lanigera
27754988 27754988 PRJNA1180292_P_NODE_7344_length_261_cov_1.106383_g7212_i0 PRJNA1180292 7344 261 1.106383 2.88765963 Metazoa 33208 Chordata Chordata 108 2.01e-25   NR KAF7476889.1 9995 g7212 i0 53.1 11.183908045977 81 38 93.1 0 3 245 10 90 KAF7476889.1 glucose 1 6-bisphosphate synthase [Marmota monax] diamond 2919 108 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota monax
28291361 28291361 PRJNA1180292_P_NODE_9846_length_249_cov_0.886364_g9714_i0 PRJNA1180292 9846 249 0.886364 2.20704636 Phasianidae 9005 Chordata Chordata 49.7 9.03e-5   NR XP_042665295.1 9002 g9714 i0 39.3 2.6144578313253 56 33 66.3 1 197 33 73 128 XP_042665295.1 coiled-coil domain-containing protein 86 [Centrocercus urophasianus] diamond 651 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Centrocercus Centrocercus urophasianus
28462000 28462000 PRJNA1180292_P_NODE_12486_length_243_cov_0.917647_g12354_i0 PRJNA1180292 12486 243 0.917647 2.22988221 Branchiostoma floridae 7739 Chordata Chordata 61.2 1.11e-8   NR XP_035666718.1 7739 g12354 i0 41.3 1.97530864197531 80 42 92.6 2 227 3 380 459 XP_035666718.1 THO complex subunit 1-like [Branchiostoma floridae] diamond 480 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
28954778 28954778 PRJNA1180292_P_NODE_8508_length_252_cov_0.871508_g8376_i0 PRJNA1180292 8508 252 0.871508 2.19620016 Metazoa 33208 Chordata Chordata 131 2.27e-33   NR KAK9408901.1 8729 g8376 i0 87.7 100.059523809524 73 9 86.9 0 32 250 660 732 KAK9408901.1 ras-related protein Rab-11B [Crotalus adamanteus] diamond 25215 131 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
28986369 28986369 PRJNA1180292_P_NODE_1508_length_561_cov_2.407787_g1376_i0 PRJNA1180292 1508 561 2.407787 13.50768507 Metazoa 33208 Chordata Chordata 262 1.64e-84   NR XP_035686109.1 7739 g1376 i0 69 39.0320855614973 187 56 99.5 2 4 561 139 324 XP_035686109.1 cathepsin L1-like [Branchiostoma floridae] diamond 21897 264 0.992424242424242 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
29030372 29030372 PRJNA1180292_P_NODE_6308_length_280_cov_1.125604_g6176_i0 PRJNA1180292 6308 280 1.125604 3.1516912 Myodes glareolus 447135 Chordata Chordata 64.3 1.12e-9   NR XP_048307916.1 447135 g6176 i0 55.9 3.04285714285714 59 25 63.2 1 102 278 16 73 XP_048307916.1 cyclin-dependent kinase 3 isoform X2 [Myodes glareolus] diamond 852 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Myodes Myodes glareolus
29270094 29270094 PRJNA1180292_P_NODE_6129_length_283_cov_1.471429_g5997_i0 PRJNA1180292 6129 283 1.471429 4.16414407 Leporidae 9979 Chordata Chordata 81.3 1.7e-15   NR XP_062045412.1 9983 g5997 i0 45.7 16.5795053003534 92 49 96.5 1 282 10 128 219 XP_062045412.1 mitogen-activated protein kinase 15 [Lepus europaeus] diamond 4692 81.6 0.996323529411765 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Lepus Lepus europaeus
30344704 30344704 PRJNA1180292_P_NODE_3672_length_357_cov_2.193662_g3540_i0 PRJNA1180292 3672 357 2.193662 7.83137334 Metazoa 33208 Chordata Chordata 97.1 6.66e-24   NR XP_067976424.1 7769 g3540 i0 73.4 7.00840336134454 64 16 52.9 1 81 269 1 64 XP_067976424.1 stress-associated endoplasmic reticulum protein 2 [Myxine glutinosa] diamond 2502 97.4 0.996919917864476 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
30502115 30502115 PRJNA1180292_P_NODE_7493_length_258_cov_1.281081_g7361_i0 PRJNA1180292 7493 258 1.281081 3.30518898 Opisthokonta 33154 Chordata Chordata 59.7 2.11e-8   NR XP_035657717.1 7739 g7361 i0 51.2 3.08139534883721 86 38 100 2 1 258 129 210 XP_035657717.1 nascent polypeptide-associated complex subunit alpha-like [Branchiostoma floridae] diamond 795 60.1 0.993344425956739 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30862072 30862072 PRJNA1180292_P_NODE_3994_length_344_cov_1.900369_g3862_i0 PRJNA1180292 3994 344 1.900369 6.53726936 Styela clava 7725 Chordata Chordata 52.8 3.33e-5   NR XP_039267201.1 7725 g3862 i0 45.8 0.418604651162791 48 26 41.9 0 342 199 263 310 XP_039267201.1 plasma kallikrein-like [Styela clava] diamond 144 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
30913007 30913007 PRJNA1180292_P_NODE_3394_length_372_cov_1.565217_g3262_i0 PRJNA1180292 3394 372 1.565217 5.82260724 Metazoa 33208 Chordata Chordata 107 3.79e-25   NR ADZ28615.1 7830 g3262 i0 96.4 431.967741935484 55 2 44.4 0 112 276 292 346 ADZ28615.1 cytochrome c oxidase subunit I, partial [Scyliorhinus canicula] diamond 160692 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
31102267 31102267 PRJNA1180292_P_NODE_4295_length_334_cov_1.057471_g4163_i0 PRJNA1180292 4295 334 1.057471 3.53195314 Chordata 7711 Chordata Chordata 130 7.3e-35   NR XP_042308365.1 8520 g4163 i0 63.4 8.15568862275449 101 32 86.2 1 47 334 66 166 XP_042308365.1 selenide, water dikinase 2-like [Sceloporus undulatus] diamond 2724 130 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Phrynosomatidae Sceloporus Sceloporus undulatus
31165291 31165291 PRJNA1180292_P_NODE_13255_length_231_cov_2.468354_g13123_i0 PRJNA1180292 13255 231 2.468354 5.70189774 Chordata 7711 Chordata Chordata 56.6 3.92e-7   NR XP_021097111.1 10181 g13123 i0 42.2 16.4415584415584 64 37 83.1 0 5 196 355 418 XP_021097111.1 dynactin subunit 2 isoform X1 [Heterocephalus glaber] diamond 3798 57 0.992982456140351 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Heterocephalus Heterocephalus glaber
32114665 32114665 PRJNA1180292_P_NODE_4918_length_313_cov_1.300000_g4786_i0 PRJNA1180292 4918 313 1.3 4.069 Chordata 7711 Chordata Chordata 70.5 6.31e-12   NR ERE74594.1 10029 g4786 i0 54.5 6.25878594249201 66 30 63.3 0 2 199 123 188 ERE74594.1 acidic leucine-rich nuclear phosphoprotein 32 family member A-like protein [Cricetulus griseus] diamond 1959 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
32158800 32158800 PRJNA1180292_P_NODE_8798_length_251_cov_0.876404_g8666_i0 PRJNA1180292 8798 251 0.876404 2.19977404 Branchiostoma belcheri 7741 Chordata Chordata 51.6 3.03e-5   NR XP_019618926.1 7741 g8666 i0 66.7 1.18326693227092 33 11 39.4 0 251 153 153 185 XP_019618926.1 PREDICTED: uncharacterized protein LOC109465878 [Branchiostoma belcheri] diamond 297 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
32431017 32431017 PRJNA1180292_P_NODE_10359_length_248_cov_0.891429_g10227_i0 PRJNA1180292 10359 248 0.891429 2.21074392 Branchiostoma 7737 Chordata Chordata 141 3.399999999999999e-38   NR XP_035688165.1 7739 g10227 i0 78 2.9758064516129 82 18 99.2 0 3 248 206 287 XP_035688165.1 26S proteasome non-ATPase regulatory subunit 11-like [Branchiostoma floridae] diamond 738 141 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32462676 32462676 PRJNA1180292_P_NODE_12119_length_244_cov_0.912281_g11987_i0 PRJNA1180292 12119 244 0.912281 2.22596564 Chondrichthyes 7777 Chordata Chordata 77.4 2.28e-14   NR XP_038657800.1 7830 g11987 i0 43.8 12.5286885245902 80 45 98.4 0 242 3 694 773 XP_038657800.1 suppressor of tumorigenicity 14 protein-like isoform X1 [Scyliorhinus canicula] diamond 3057 77.4 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;