RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1180292" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA1180292 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30230166 30230166 PRJNA1180292_P_NODE_6452_length_277_cov_1.387255_g6320_i0 PRJNA1180292 6452 277 1.387255 3.84269635 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 113 1.02e-26   NR AVM87439.1 3063761 g6320 i0 62 0.855595667870036 79 30 85.6 0 253 17 1065 1143 AVM87439.1 polyprotein [Wuhan sharpbelly picornavirus 1] diamond 237 113 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Danio blood picornavirus/Zebrafish picornavirus 2
30818050 30818050 PRJNA1180292_P_NODE_5974_length_286_cov_1.464789_g5842_i0 PRJNA1180292 5974 286 1.464789 4.18929654 Gammapartitivirus 1511811 Viruses Viruses 85.5 5.68e-17   NR NP_116716.1 148880 g5842 i0 40.4 4.96153846153846 94 55 98.6 1 283 2 251 343 NP_116716.1 RNA-dependent RNA polymerase [Discula destructiva virus 1] diamond 1419 85.9 0.9953434225844 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae Gammapartitivirus Gammapartitivirus unodisculae
32411886 32411886 PRJNA1180292_P_NODE_4839_length_316_cov_0.872428_g4707_i0 PRJNA1180292 4839 316 0.872428 2.75687248 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 50.4 1.76e-4   NR YP_009345900.1 3063761 g4707 i0 33.8 1.5379746835443 80 49 73.1 2 308 78 835 913 YP_009345900.1 polyprotein [Crohivirus B] diamond 486 50.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Crohivirus Danio blood picornavirus/Zebrafish picornavirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;