RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1175041" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1175041 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27008778 27008778 PRJNA1175041_P_NODE_106022_length_241_cov_0.904762_g103154_i0 PRJNA1175041 106022 241 0.904762 2.18047642 Cystobacterineae bacterium 1934914 Bacteria Bacteria 45.4 0.00399   NR MCL2012724.1 1934914 g103154 i0 38.1 0.784232365145228 63 38 77.2 1 188 3 346 408 MCL2012724.1 FAD-dependent oxidoreductase [Cystobacterineae bacterium] diamond 189 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Cystobacterineae bacterium
31810618 31810618 PRJNA1175041_P_NODE_90017_length_266_cov_1.139896_g87149_i0 PRJNA1175041 90017 266 1.139896 3.03212336 Haliangiales bacterium 3069304 Bacteria Bacteria 42.7 0.0433   NR HYT61386.1 3069304 g87149 i0 33.8 0.800751879699248 71 32 72.2 3 44 235 104 166 HYT61386.1 prolyl oligopeptidase family serine peptidase [Haliangiales bacterium] diamond 213 42.7 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales     Haliangiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;