RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1175041" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1175041 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30628254 30628254 PRJNA1175041_P_NODE_83373_length_284_cov_1.218009_g80505_i0 PRJNA1175041 83373 284 1.218009 3.45914556 Actinomycetes 1760 Bacteria Bacteria 43.9 0.0232   NR WP_281860861.1 120377 g80505 i0 32.2 1.26760563380282 59 40 62.3 0 7 183 370 428 WP_281860861.1 ATP-binding protein [Salana multivorans] diamond 360 44.3 0.99097065462754 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Beutenbergiaceae Salana Salana multivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;