RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1175041" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1175041 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29945925 29945925 PRJNA1175041_P_NODE_89111_length_268_cov_1.482051_g86243_i0 PRJNA1175041 89111 268 1.482051 3.97189668 Opitutaceae bacterium 2006848 Bacteria Bacteria 43.5 0.0272   NR HEY3756961.1 2006848 g86243 i0 31 0.649253731343284 58 40 64.9 0 34 207 31 88 HEY3756961.1 mechanosensitive ion channel family protein [Opitutaceae bacterium] diamond 174 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
32063615 32063615 PRJNA1175041_P_NODE_88138_length_271_cov_1.090909_g85270_i0 PRJNA1175041 88138 271 1.090909 2.95636339 Planctomycetota bacterium 2026780 Bacteria Bacteria 44.7 0.0107   NR MEM7198959.1 2026780 g85270 i0 36.5 0.697416974169742 63 39 69.7 1 6 194 29 90 MEM7198959.1 S46 family peptidase [Planctomycetota bacterium] diamond 189 44.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;