RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1174234" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174234 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6694096 6694096 PRJNA1174234_P_NODE_33606_length_244_cov_0.900585_g33410_i0 PRJNA1174234 33606 244 0.900585 2.1974274 uncultured Truepera sp. 543023 Bacteria Bacteria 153 2.73e-45   NR CAA9552189.1 543023 g33410 i0 93.8 1.99180327868852 81 5 99.6 0 1 243 69 149 CAA9552189.1 MAG: LSU ribosomal protein L6p (L9e) [uncultured Truepera sp.] diamond 486 153 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera uncultured Truepera sp.
11244224 11244224 PRJNA1174234_P_NODE_29209_length_251_cov_0.865169_g29013_i0 PRJNA1174234 29209 251 0.865169 2.17157419 uncultured Truepera sp. 543023 Bacteria Bacteria 140 1.02e-36   NR CAA9557446.1 543023 g29013 i0 84.3 0.99203187250996006 83 13 99.2 0 249 1 507 589 CAA9557446.1 MAG: Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 [uncultured Truepera sp.] diamond 249 140 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera uncultured Truepera sp.
27040594 27040594 PRJNA1174234_P_NODE_31962_length_247_cov_0.867816_g31766_i0 PRJNA1174234 31962 247 0.867816 2.14350552 uncultured Truepera sp. 543023 Bacteria Bacteria 164 4.279999999999999e-48   NR CAA9581748.1 543023 g31766 i0 95.1 0.995951417004049 82 4 99.6 0 247 2 190 271 CAA9581748.1 MAG: Pyrimidine-specific ribonucleoside hydrolase RihB [uncultured Truepera sp.] diamond 246 164 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera uncultured Truepera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;