RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1174207" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174207 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19441634 19441634 PRJNA1174207_P_NODE_27716_length_274_cov_1.532338_g27187_i0 PRJNA1174207 27716 274 1.532338 4.19860612 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 177 1e-50   NR HSA61324.1 2026770 g27187 i0 98.9 0.996350364963504 91 1 99.6 0 273 1 258 348 HSA61324.1 SulP family inorganic anion transporter [Nitrospiraceae bacterium] diamond 273 177 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
27577647 27577647 PRJNA1174207_P_NODE_33484_length_251_cov_0.865169_g32955_i0 PRJNA1174207 33484 251 0.865169 2.17157419 Nitrospira cf. moscoviensis SBR1 96242 Bacteria Bacteria 169 6.08e-51   NR WP_087473504.1 96242 g32955 i0 97.6 3.9681274900398402 83 2 99.2 0 1 249 73 155 WP_087473504.1 ribose-5-phosphate isomerase RpiA [Nitrospira cf. moscoviensis SBR1015] diamond 996 169 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira cf. moscoviensis SBR1015
28240512 28240512 PRJNA1174207_P_NODE_31266_length_259_cov_2.102151_g30737_i0 PRJNA1174207 31266 259 2.102151 5.44457109 Nitrospirota bacterium 2026887 Bacteria Bacteria 42.7 0.0435   NR MBS1192852.1 2026887 g30737 i0 57.6 0.382239382239382 33 14 38.2 0 137 39 345 377 MBS1192852.1 box helicase domain protein [Nitrospirota bacterium] diamond 99 42.7 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
28525018 28525018 PRJNA1174207_P_NODE_39967_length_243_cov_0.905882_g39438_i0 PRJNA1174207 39967 243 0.905882 2.20129326 Nitrospiria bacterium 2306052 Bacteria Bacteria 65.9 2.48e-10   NR MFI5305588.1 2306052 g39438 i0 68.9 2.66666666666667 45 14 55.6 0 3 137 359 403 MFI5305588.1 phosphomannomutase/phosphoglucomutase [Nitrospiria bacterium] diamond 648 65.9 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria       Nitrospiria bacterium
28872101 28872101 PRJNA1174207_P_NODE_26568_length_279_cov_1.495146_g26039_i0 PRJNA1174207 26568 279 1.495146 4.17145734 Nitrospira lenta 1436998 Bacteria Bacteria 84.7 4.34e-17   NR WP_181416609.1 1436998 g26039 i0 91.1 0.967741935483871 45 4 48.4 0 135 1 1 45 WP_181416609.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein [Nitrospira lenta] diamond 270 84.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira lenta
29377344 29377344 PRJNA1174207_P_NODE_38469_length_245_cov_0.895349_g37940_i0 PRJNA1174207 38469 245 0.895349 2.19360505 Nitrospirota bacterium 2026887 Bacteria Bacteria 132 1.82e-35   NR MDP3596947.1 2026887 g37940 i0 80.5 3.01224489795918 82 15 99.2 1 245 3 234 315 MDP3596947.1 L-threonylcarbamoyladenylate synthase [Nitrospirota bacterium] diamond 738 132 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
32443614 32443614 PRJNA1174207_P_NODE_37759_length_246_cov_0.890173_g37230_i0 PRJNA1174207 37759 246 0.890173 2.18982558 Nitrospira sp. 70125 Bacteria Bacteria 132 2.02e-34   NR MBS0154534.1 70125 g37230 i0 87.7 1.96341463414634 81 10 98.8 0 1 243 10 90 MBS0154534.1 TolC family protein [Nitrospira sp.] diamond 483 132 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
32790051 32790051 PRJNA1174207_P_NODE_37320_length_246_cov_0.890173_g36791_i0 PRJNA1174207 37320 246 0.890173 2.18982558 Nitrospira sp. KM1 1936990 Bacteria Bacteria 150 2.1799999999999994e-42   NR WP_173048871.1 1936990 g36791 i0 87.5 0.975609756097561 80 10 97.6 0 5 244 147 226 WP_173048871.1 hypothetical protein [Nitrospira sp. KM1] diamond 240 150 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. KM1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;