RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1174207" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174207 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27735847 27735847 PRJNA1174207_P_NODE_42084_length_237_cov_4.835366_g41555_i0 PRJNA1174207 42084 237 4.835366 11.45981742 Mycoplasmopsis arginini 2094 Bacteria Bacteria 130 2.09e-33   NR WP_206602618.1 2094 g41555 i0 94.2 6.9746835443038 69 4 87.3 0 236 30 292 360 WP_206602618.1 NADH-quinone oxidoreductase subunit A [Mycoplasmopsis arginini] diamond 1653 130 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
30293678 30293678 PRJNA1174207_P_NODE_35032_length_249_cov_0.875000_g34503_i0 PRJNA1174207 35032 249 0.875 2.17875 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 80.1 3.39e-17   NR MFU8793578.1 1898209 g34503 i0 47.4 0.939759036144578 78 41 94 0 235 2 1 78 MFU8793578.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 234 80.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;