RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1174207" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1174207 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11794512 11794512 PRJNA1174207_P_NODE_42470_length_234_cov_2.285714_g41941_i0 PRJNA1174207 42470 234 2.285714 5.34857076 Longimicrobium sp. 2029185 Bacteria Bacteria 152 1.42e-43   NR HST57198.1 2029185 g41941 i0 88.5 3 78 9 100 0 1 234 86 163 HST57198.1 nucleotidyltransferase domain-containing protein [Longimicrobium sp.] diamond 702 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
27122625 27122625 PRJNA1174207_P_NODE_42142_length_237_cov_2.414634_g41613_i0 PRJNA1174207 42142 237 2.414634 5.72268258 Bacteria 2 Bacteria Bacteria 72 1.26e-12   NR HNV74716.1 2026741 g41613 i0 77.8 1.70886075949367 45 10 57 0 1 135 299 343 HNV74716.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 405 72 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28512467 28512467 PRJNA1174207_P_NODE_43567_length_212_cov_4.856115_g43038_i0 PRJNA1174207 43567 212 4.856115 10.2949638 Gemmatimonadota 142182 Bacteria Bacteria 41.6 0.0396   NR HEY5490311.1 2026741 g43038 i0 60 1.31603773584906 30 12 42.5 0 9 98 129 158 HEY5490311.1 hotdog fold domain-containing protein [Gemmatimonadaceae bacterium] diamond 279 42 0.990476190476191 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30861984 30861984 PRJNA1174207_P_NODE_33414_length_251_cov_0.865169_g32885_i0 PRJNA1174207 33414 251 0.865169 2.17157419 Gemmatimonas sp. UBA7669 1946568 Bacteria Bacteria 167 2.65e-47   NR WP_291162769.1 1946568 g32885 i0 93.9 0.9800796812749 82 5 98 0 5 250 177 258 WP_291162769.1 4-alpha-glucanotransferase [Gemmatimonas sp. UBA7669] diamond 246 167 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp. UBA7669
31620694 31620694 PRJNA1174207_P_NODE_24576_length_287_cov_2.794393_g24047_i0 PRJNA1174207 24576 287 2.794393 8.01990791 Longimicrobium sp. 2029185 Bacteria Bacteria 90.5 1.17e-19   NR HYR09228.1 2029185 g24047 i0 93.2 0.45993031358885 44 3 46 0 3 134 217 260 HYR09228.1 hypothetical protein [Longimicrobium sp.] diamond 132 90.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;