RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA1174207" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1174207 · 15 ✖

analysis 1

  • diamond · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6693483 6693483 PRJNA1174207_P_NODE_25866_length_282_cov_1.382775_g25337_i0 PRJNA1174207 25866 282 1.382775 3.8994255 Opisthokonta 33154 Chordata Chordata 163 1.13e-45   NR CAH1238186.1 7740 g25337 i0 87.1 158.297872340426 93 12 98.9 0 2 280 349 441 CAH1238186.1 ATP5B [Branchiostoma lanceolatum] diamond 44640 163 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
9243921 9243921 PRJNA1174207_P_NODE_7568_length_585_cov_1.830078_g7045_i0 PRJNA1174207 7568 585 1.830078 10.7059563 Metazoa 33208 Chordata Chordata 231 4.82e-73   NR XP_012422504.1 9708 g7045 i0 61.7 15.8410256410256 193 73 99 1 7 585 63 254 XP_012422504.1 PREDICTED: guanine nucleotide-binding protein subunit beta-2-like 1 isoform X2 [Odobenus rosmarus divergens] diamond 9267 232 0.995689655172414 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Odobenidae Odobenus Odobenus rosmarus
15618144 15618144 PRJNA1174207_P_NODE_13953_length_390_cov_1.652997_g13424_i0 PRJNA1174207 13953 390 1.652997 6.4466883 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 95.5 6.86e-20   NR DBA29038.1 30357 g13424 i0 41.5 9.36153846153846 135 66 99.2 5 387 1 76 203 DBA29038.1 TPA: hypothetical protein GDO54_009308 [Pyxicephalus adspersus] diamond 3651 96.3 0.991692627206646 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pyxicephalidae Pyxicephalus Pyxicephalus adspersus
21442285 21442285 PRJNA1174207_P_NODE_11457_length_442_cov_1.989160_g10930_i0 PRJNA1174207 11457 442 1.98916 8.7920872 Styela clava 7725 Chordata Chordata 190 2.27e-58   NR XP_039272316.1 7725 g10930 i0 68.1 3.74660633484163 138 43 93.7 1 17 430 1 137 XP_039272316.1 60S ribosomal protein L10a-like [Styela clava] diamond 1656 190 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
27072083 27072083 PRJNA1174207_P_NODE_34502_length_250_cov_0.870056_g33973_i0 PRJNA1174207 34502 250 0.870056 2.17514 Branchiostoma lanceolatum 7740 Chordata Chordata 49.3 1.78e-4   NR CAH1251781.1 7740 g33973 i0 34.6 0.936 78 49 91.2 2 229 2 34 111 CAH1251781.1 CRYBG3 [Branchiostoma lanceolatum] diamond 234 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
27154124 27154124 PRJNA1174207_P_NODE_19662_length_320_cov_0.910931_g19133_i0 PRJNA1174207 19662 320 0.910931 2.9149792 Opisthokonta 33154 Chordata Chordata 152 9.599999999999996e-44   NR XP_035694028.1 7739 g19133 i0 69.8 6.95625 106 32 99.4 0 319 2 3 108 XP_035694028.1 60S ribosomal protein L8-like [Branchiostoma floridae] diamond 2226 152 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
29377341 29377341 PRJNA1174207_P_NODE_26529_length_279_cov_1.495146_g26000_i0 PRJNA1174207 26529 279 1.495146 4.17145734 Oryctolagus cuniculus 9986 Chordata Chordata 59.3 1.12e-8   NR 3J0L_K 9986 g26000 i0 68.6 0.376344086021505 35 11 37.6 0 107 3 2 36 3J0L_K Chain K, Ribosomal protein S14 [Oryctolagus cuniculus] diamond 105 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
30313048 30313048 PRJNA1174207_P_NODE_30652_length_262_cov_1.433862_g30123_i0 PRJNA1174207 30652 262 1.433862 3.75671844 Aves 8782 Chordata Chordata 70.1 1.14e-11   NR XP_037263878.1 120794 g30123 i0 49.2 17.3129770992366 63 32 72.1 0 262 74 1078 1140 XP_037263878.1 copper-transporting ATPase 1 isoform X2 [Falco rusticolus] diamond 4536 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Falconiformes Falconidae Falco Falco rusticolus
30798698 30798698 PRJNA1174207_P_NODE_43034_length_228_cov_2.703226_g42505_i0 PRJNA1174207 43034 228 2.703226 6.16335528 Sapayoa aenigma 239371 Chordata Chordata 55.1 3e-7   NR NXA07817.1 239371 g42505 i0 44.4 4.85526315789474 63 32 78.9 1 228 49 82 144 NXA07817.1 CALMS protein [Sapayoa aenigma] diamond 1107 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Tyrannidae Sapayoa Sapayoa aenigma
30893775 30893775 PRJNA1174207_P_NODE_34054_length_250_cov_1.435028_g33525_i0 PRJNA1174207 34054 250 1.435028 3.58757 Ranitomeya imitator 111125 Chordata Chordata 47.8 6.3e-4   NR CAJ0956274.1 111125 g33525 i0 55.9 0.408 34 15 40.8 0 149 250 1 34 CAJ0956274.1 unnamed protein product [Ranitomeya imitator] diamond 102 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
32082804 32082804 PRJNA1174207_P_NODE_38838_length_244_cov_1.426901_g38309_i0 PRJNA1174207 38838 244 1.426901 3.48163844 Metazoa 33208 Chordata Chordata 45.8 0.00304   NR XP_043941651.1 7888 g38309 i0 38.6 5.86475409836066 70 41 83.6 1 231 28 62 131 XP_043941651.1 interferon-induced protein 44-like isoform X1 [Protopterus annectens] diamond 1431 46.2 0.991341991341991 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
32146184 32146184 PRJNA1174207_P_NODE_15598_length_365_cov_1.842466_g15069_i0 PRJNA1174207 15598 365 1.842466 6.7250009 Chordata 7711 Chordata Chordata 124 6.699999999999999e-32   NR XP_036711072.1 9771 g15069 i0 62.7 30.7397260273973 110 40 90.4 1 365 36 178 286 XP_036711072.1 60S ribosomal protein L35 isoform X1 [Balaenoptera musculus] diamond 11220 125 0.992 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera musculus
32253795 32253795 PRJNA1174207_P_NODE_34518_length_250_cov_0.870056_g33989_i0 PRJNA1174207 34518 250 0.870056 2.17514 Bufotes viridis 30338 Chordata Chordata 58.2 7.18e-8   NR CAK8641430.1 30338 g33989 i0 61.7 0.564 47 14 51.6 1 3 131 174 220 CAK8641430.1 Transposable element Tc3 transposase [Bufotes viridis] diamond 141 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
32304641 32304641 PRJNA1174207_P_NODE_42819_length_230_cov_2.917197_g42290_i0 PRJNA1174207 42819 230 2.917197 6.7095531 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 51.6 2.24e-5   NR CAL5927691.1 7750 g42290 i0 41.1 4.81304347826087 73 34 95.2 2 230 12 18 81 CAL5927691.1 unnamed protein product [Lampetra planeri] diamond 1107 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
32683330 32683330 PRJNA1174207_P_NODE_14700_length_378_cov_2.154098_g14171_i0 PRJNA1174207 14700 378 2.154098 8.14249044 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 83.2 1.11e-15   NR XP_053781804.1 9430 g14171 i0 44.3 1.45238095238095 97 53 76.2 1 289 2 265 361 XP_053781804.1 LOW QUALITY PROTEIN: calponin-2-like [Desmodus rotundus] diamond 549 83.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Desmodus Desmodus rotundus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;