RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1174207" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174207 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30564925 30564925 PRJNA1174207_P_NODE_21973_length_304_cov_1.229437_g21444_i0 PRJNA1174207 21973 304 1.229437 3.73748848 Bacteria 2 Bacteria Bacteria 166 5e-50   NR PUB99708.1 210 g21444 i0 100 2.33881578947368 79 0 78 0 237 1 7 85 PUB99708.1 hypothetical protein C2S07_01860, partial [Helicobacter pylori] diamond 711 166 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31430900 31430900 PRJNA1174207_P_NODE_40356_length_242_cov_1.739645_g39827_i0 PRJNA1174207 40356 242 1.739645 4.2099409 Campylobacterota bacterium 2026809 Bacteria Bacteria 86.3 1.1e-17   NR MEA1917427.1 2026809 g39827 i0 42.5 0.991735537190083 80 46 99.2 0 3 242 169 248 MEA1917427.1 heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein [Campylobacterota bacterium] diamond 240 86.3 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;