RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1174207" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174207 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29093355 29093355 PRJNA1174207_P_NODE_23228_length_294_cov_3.063348_g22699_i0 PRJNA1174207 23228 294 3.063348 9.00624312 Armatimonadaceae bacterium 2933160 Bacteria Bacteria 71.2 5.34e-13   NR HVK04704.1 2933160 g22699 i0 47.9 0.724489795918367 71 37 72.4 0 2 214 86 156 HVK04704.1 DinB family protein [Armatimonadaceae bacterium] diamond 213 71.2 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae   Armatimonadaceae bacterium
30134984 30134984 PRJNA1174207_P_NODE_40932_length_242_cov_0.911243_g40403_i0 PRJNA1174207 40932 242 0.911243 2.20520806 Armatimonas sp. 1872638 Bacteria Bacteria 61.2 6.58e-9   NR WP_309719584.1 1872638 g40403 i0 47.4 1.41322314049587 57 30 70.7 0 241 71 198 254 WP_309719584.1 SPOR domain-containing protein [Armatimonas sp.] diamond 342 61.2 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae Armatimonas Armatimonas sp.
31196780 31196780 PRJNA1174207_P_NODE_42795_length_230_cov_3.222930_g42266_i0 PRJNA1174207 42795 230 3.22293 7.412739 Bacteria 2 Bacteria Bacteria 43.9 0.0093   NR MEP0767071.1 2575566 g42266 i0 33.3 1.95652173913043 75 43 88.7 1 221 18 112 186 MEP0767071.1 PEP-CTERM sorting domain-containing protein [Fimbriimonadia bacterium] diamond 450 43.9 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia       Fimbriimonadia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;