RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA1169999" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1169999 · 12 ✖

analysis 1

  • diamond · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26850817 26850817 PRJNA1169999_P_NODE_1441_length_305_cov_0.879310_g1405_i0 PRJNA1169999 1441 305 0.87931 2.6818955 Tachyglossus aculeatus 9261 Chordata Chordata 54.7 1.51e-6   NR XP_038627340.1 9261 g1405 i0 64.3 14.8819672131148 42 15 41.3 0 2 127 128 169 XP_038627340.1 ferredoxin-2, mitochondrial [Tachyglossus aculeatus] diamond 4539 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Tachyglossidae Tachyglossus Tachyglossus aculeatus
26945455 26945455 PRJNA1169999_P_NODE_4162_length_241_cov_0.916667_g4126_i0 PRJNA1169999 4162 241 0.916667 2.20916747 Varanus komodoensis 61221 Chordata Chordata 98.6 5.37e-24   NR KAF7242392.1 61221 g4126 i0 69.9 0.908713692946058 73 22 90.9 0 1 219 10 82 KAF7242392.1 hypothetical protein EYD10_11243 [Varanus komodoensis] diamond 219 98.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
27786475 27786475 PRJNA1169999_P_NODE_3884_length_243_cov_0.905882_g3848_i0 PRJNA1169999 3884 243 0.905882 2.20129326 Corvus 30420 Chordata Chordata 44.3 0.0113   NR XP_041880445.1 68294 g3848 i0 34.7 1.85185185185185 75 48 92.6 1 237 13 830 903 XP_041880445.1 rho guanine nucleotide exchange factor 4 isoform X1 [Corvus kubaryi] diamond 450 44.7 0.991051454138702 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Corvus Corvus kubaryi
28840499 28840499 PRJNA1169999_P_NODE_2748_length_251_cov_0.865169_g2712_i0 PRJNA1169999 2748 251 0.865169 2.17157419 Petaurus breviceps papuanus 3040969 Chordata Chordata 56.6 1.14e-7   NR XP_068953723.1 3040969 g2712 i0 72.7 0.394422310756972 33 9 39.4 0 240 142 109 141 XP_068953723.1 ubiquitin-like FUBI-ribosomal protein eS30 fusion protein [Petaurus breviceps papuanus] diamond 99 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Petauridae Petaurus Petaurus breviceps
28891197 28891197 PRJNA1169999_P_NODE_3248_length_248_cov_0.880000_g3212_i0 PRJNA1169999 3248 248 0.88 2.1824 root 1 Root_unresolved Root_unresolved 43.5 0.0174   NR XP_069089069.1 8319 g3212 i0 38.8 1.83870967741935 49 29 58.1 1 248 105 161 209 XP_069089069.1 beta-crystallin A1-like [Pleurodeles waltl] diamond 456 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
29061774 29061774 PRJNA1169999_P_NODE_2448_length_258_cov_2.297297_g2412_i0 PRJNA1169999 2448 258 2.297297 5.92702626 Sphaerodactylus townsendi 933632 Chordata Chordata 42.7 0.043   NR XP_048338164.1 933632 g2412 i0 47.5 0.686046511627907 59 28 67.4 3 175 2 268 324 XP_048338164.1 ubiquitin-associated protein 1-like [Sphaerodactylus townsendi] diamond 177 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Sphaerodactylidae Sphaerodactylus Sphaerodactylus townsendi
29219618 29219618 PRJNA1169999_P_NODE_1469_length_301_cov_1.552632_g1433_i0 PRJNA1169999 1469 301 1.552632 4.67342232 Ranitomeya imitator 111125 Chordata Chordata 43.5 0.0342   NR CAJ0956274.1 111125 g1433 i0 58.8 0.338870431893688 34 14 33.9 0 198 299 1 34 CAJ0956274.1 unnamed protein product [Ranitomeya imitator] diamond 102 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
30356992 30356992 PRJNA1169999_P_NODE_2272_length_266_cov_0.829016_g2236_i0 PRJNA1169999 2272 266 0.829016 2.20518256 Opisthocomus hoazin 30419 Chordata Chordata 65.1 4.39e-11   NR XP_009933761.1 30419 g2236 i0 67.9 2.95488721804511 53 17 59.8 0 3 161 12 64 XP_009933761.1 PREDICTED: F-box/LRR-repeat protein 14 [Opisthocomus hoazin] diamond 786 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Opisthocomiformes Opisthocomidae Opisthocomus Opisthocomus hoazin
31905362 31905362 PRJNA1169999_P_NODE_2057_length_274_cov_1.233831_g2021_i0 PRJNA1169999 2057 274 1.233831 3.38069694 Pipistrellus kuhlii 59472 Chordata Chordata 93.6 3.04e-20   NR XP_036265340.1 59472 g2021 i0 60 1.97080291970803 90 36 98.5 0 272 3 47 136 XP_036265340.1 beta-actin-like protein 2 [Pipistrellus kuhlii] diamond 540 93.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Pipistrellus Pipistrellus kuhlii
32336224 32336224 PRJNA1169999_P_NODE_3059_length_249_cov_0.875000_g3023_i0 PRJNA1169999 3059 249 0.875 2.17875 Squamata 8509 Chordata Chordata 43.1 0.0296   NR ETE69641.1 8665 g3023 i0 44.2 5.18072289156626 43 24 51.8 0 82 210 150 192 ETE69641.1 Kinesin-like protein KIF2C [Ophiophagus hannah] diamond 1290 43.5 0.990804597701149 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
32506815 32506815 PRJNA1169999_P_NODE_1439_length_305_cov_0.900862_g1403_i0 PRJNA1169999 1439 305 0.900862 2.7476291 Petromyzon marinus 7757 Chordata Chordata 87.8 8.62e-18   NR XP_032819247.1 7757 g1403 i0 67.6 7.11147540983607 68 22 66.9 0 301 98 299 366 XP_032819247.1 adiponectin receptor protein 1-like isoform X1 [Petromyzon marinus] diamond 2169 87.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
32664154 32664154 PRJNA1169999_P_NODE_3520_length_246_cov_0.890173_g3484_i0 PRJNA1169999 3520 246 0.890173 2.18982558 Corvus brachyrhynchos 85066 Chordata Chordata 43.9 0.012   NR XP_017598364.1 85066 g3484 i0 35.7 0.853658536585366 70 44 84.1 1 242 36 149 218 XP_017598364.1 PREDICTED: uncharacterized protein LOC108448788 [Corvus brachyrhynchos] diamond 210 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Corvus Corvus brachyrhynchos

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;