RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1169999" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1169999 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2866060 2866060 PRJNA1169999_P_NODE_2463_length_258_cov_1.448649_g2427_i0 PRJNA1169999 2463 258 1.448649 3.73751442 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 130 1.77e-34   NR HEY8279108.1 3034175 g2427 i0 75.3 0.988372093023256 85 21 98.8 0 257 3 75 159 HEY8279108.1 trypsin-like peptidase domain-containing protein [Bdellovibrionota bacterium] diamond 255 130 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32443603 32443603 PRJNA1169999_P_NODE_2939_length_250_cov_0.870056_g2903_i0 PRJNA1169999 2939 250 0.870056 2.17514 Bacteriovorax sp. BSW11_IV 1353529 Bacteria Bacteria 89.4 8.94e-19   NR WP_196801731.1 1353529 g2903 i0 59.5 1.008 84 32 98.4 2 3 248 114 197 WP_196801731.1 chloride channel protein [Bacteriovorax sp. BSW11_IV] diamond 252 89.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. BSW11_IV

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;