RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1168532" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

bioproject 1

  • PRJNA1168532 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26660312 26660312 PRJNA1168532_S_NODE_26701_length_536_cov_2.014199_g24114_i0 PRJNA1168532 26701 536 2.014199 10.79610664 Gammaretrovirus murleu 3428959 Viruses Viruses 364 1.51e-122   NR 8WUS_E 11801 g24114 i0 99.4 2.98880597014925 178 1 99.6 0 535 2 151 328 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 1602 364 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
27861672 27861672 PRJNA1168532_S_NODE_128145_length_283_cov_3.020833_g125202_i0 PRJNA1168532 128145 283 3.020833 8.54895739 Human alphaherpesvirus 1 10298 Viruses Viruses 55.1 5.09e-8   NR DAC85507.1 10298 g125202 i0 68.6 0.68904593639576 35 11 37.1 0 42 146 1 35 DAC85507.1 TPA_asm: UL22 uORF 2, partial [Human alphaherpesvirus 1] diamond 195 55.1 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1
28998807 28998807 PRJNA1168532_S_NODE_158028_length_252_cov_2.148325_g155085_i0 PRJNA1168532 158028 252 2.148325 5.413779 Betapolyomavirus macacae 1891767 Viruses Viruses 70.1 9.39e-12   NR AAK29054.1 1891767 g155085 i0 82.5 0.476190476190476 40 7 47.6 0 119 238 498 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 120 70.1 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
29965034 29965034 PRJNA1168532_S_NODE_85651_length_343_cov_4.476667_g82708_i0 PRJNA1168532 85651 343 4.476667 15.35496781 Gammaretrovirus 153135 Viruses Viruses 216 1.62e-62   NR NP_040333.1 11795 g82708 i0 95.6 8.89504373177843 113 5 98.8 0 341 3 633 745 NP_040333.1 RNA-dependent DNA polymerase, partial [Friend murine leukemia virus] diamond 3051 218 0.990825688073395 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;