contig_metadata
5 rows where analysis = "diamond", bioproject = "PRJNA1168532" and tax_phylum = "Pseudomonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27281089 | 27281089 | PRJNA1168532_S_NODE_169343_length_242_cov_1.964824_g166400_i0 | PRJNA1168532 | 169343 | 242 | 1.964824 | 4.75487408 | Nitrosomonas | 914 | Bacteria | Bacteria | 75.1 | 1.46e-13 | NR | WP_082110325.1 | 914 | g166400 | i0 | 49.4 | 4.97107438016529 | 81 | 40 | 99.2 | 1 | 1 | 240 | 383 | 463 | WP_082110325.1 MULTISPECIES: glycosyltransferase [Nitrosomonas] | diamond | 1203 | 75.5 | 0.994701986754967 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Nitrosomonadales | Nitrosomonadaceae | Nitrosomonas | |||
| 28430247 | 28430247 | PRJNA1168532_S_NODE_363046_length_150_cov_0.878505_g360103_i0 | PRJNA1168532 | 363046 | 150 | 0.878505 | 1.3177575 | Pseudomonas oryzihabitans | 47885 | Bacteria | Bacteria | 75.9 | 9.81e-15 | NR | WP_313333256.1 | 47885 | g360103 | i0 | 100 | 0.78 | 39 | 0 | 78 | 0 | 149 | 33 | 256 | 294 | WP_313333256.1 LysR family transcriptional regulator [Pseudomonas oryzihabitans] | diamond | 117 | 75.9 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas oryzihabitans | ||
| 31165272 | 31165272 | PRJNA1168532_S_NODE_314215_length_164_cov_0.809917_g311272_i0 | PRJNA1168532 | 314215 | 164 | 0.809917 | 1.32826388 | root | 1 | Root_unresolved | Root_unresolved | 90.1 | 3.4900000000000005e-21 | NR | WP_236536977.1 | 317 | g311272 | i0 | 83.3 | 36.530487804878 | 54 | 9 | 98.8 | 0 | 1 | 162 | 76 | 129 | WP_236536977.1 phosphotransferase, partial [Pseudomonas syringae] | diamond | 5991 | 90.1 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas syringae | ||
| 31241040 | 31241040 | PRJNA1168532_S_NODE_182275_length_232_cov_1.174603_g179332_i0 | PRJNA1168532 | 182275 | 232 | 1.174603 | 2.72507896 | Pseudomonas aeruginosa | 287 | Bacteria | Bacteria | 75.1 | 4.4e-16 | NR | WP_410954888.1 | 287 | g179332 | i0 | 86 | 0.556034482758621 | 43 | 6 | 55.6 | 0 | 99 | 227 | 7 | 49 | WP_410954888.1 hypothetical protein, partial [Pseudomonas aeruginosa] | diamond | 129 | 75.1 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas aeruginosa | ||
| 32127106 | 32127106 | PRJNA1168532_S_NODE_160498_length_250_cov_1.338164_g157555_i0 | PRJNA1168532 | 160498 | 250 | 1.338164 | 3.34541 | Sulfitobacter sp. | 1903071 | Bacteria | Bacteria | 44.3 | 0.00695 | NR | MEH6831101.1 | 1903071 | g157555 | i0 | 46.2 | 0.468 | 39 | 20 | 45.6 | 1 | 128 | 15 | 36 | 74 | MEH6831101.1 GNAT family N-acetyltransferase [Sulfitobacter sp.] | diamond | 117 | 44.3 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Rhodobacterales | Roseobacteraceae | Sulfitobacter | Sulfitobacter sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;