contig_metadata
8 rows where analysis = "diamond", bioproject = "PRJNA1168532" and tax_phylum = "Chordata"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26882428 | 26882428 | PRJNA1168532_S_NODE_297821_length_169_cov_2.420635_g294878_i0 | PRJNA1168532 | 297821 | 169 | 2.420635 | 4.09087315 | Orcinus orca | 9733 | Chordata | Chordata | 52 | 6.78e-6 | NR | XP_049563841.1 | 9733 | g294878 | i0 | 94.4 | 0.63905325443787 | 36 | 2 | 63.9 | 0 | 60 | 167 | 1 | 36 | XP_049563841.1 translation initiation factor IF-2-like [Orcinus orca] | diamond | 108 | 52 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Artiodactyla | Delphinidae | Orcinus | Orcinus orca | |
| 29851089 | 29851089 | PRJNA1168532_S_NODE_286611_length_174_cov_0.969466_g283668_i0 | PRJNA1168532 | 286611 | 174 | 0.969466 | 1.68687084 | Sciurus carolinensis | 30640 | Chordata | Chordata | 70.1 | 3.27e-12 | NR | MBZ3889236.1 | 30640 | g283668 | i0 | 68.4 | 0.982758620689655 | 57 | 8 | 98.3 | 1 | 2 | 172 | 111 | 157 | MBZ3889236.1 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A [Sciurus carolinensis] | diamond | 171 | 70.1 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Sciuridae | Sciurus | Sciurus carolinensis | |
| 30640674 | 30640674 | PRJNA1168532_S_NODE_362973_length_150_cov_0.878505_g360030_i0 | PRJNA1168532 | 362973 | 150 | 0.878505 | 1.3177575 | Eschrichtius robustus | 9764 | Chordata | Chordata | 41.2 | 0.0378 | NR | XP_068406946.1 | 9764 | g360030 | i0 | 56.7 | 0.6 | 30 | 13 | 60 | 0 | 61 | 150 | 264 | 293 | XP_068406946.1 LOW QUALITY PROTEIN: RNA-binding protein with multiple splicing 2-like [Eschrichtius robustus] | diamond | 90 | 41.2 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Artiodactyla | Eschrichtiidae | Eschrichtius | Eschrichtius robustus | |
| 32095241 | 32095241 | PRJNA1168532_S_NODE_345838_length_153_cov_3.572727_g342895_i0 | PRJNA1168532 | 345838 | 153 | 3.572727 | 5.46627231 | Oryctolagus cuniculus | 9986 | Chordata | Chordata | 59.7 | 1.11e-8 | NR | XP_069906595.1 | 9986 | g342895 | i0 | 59.6 | 3.68627450980392 | 47 | 19 | 92.2 | 0 | 6 | 146 | 594 | 640 | XP_069906595.1 LOW QUALITY PROTEIN: LINE-1 retrotransposable element ORF2 protein [Oryctolagus cuniculus] | diamond | 564 | 59.7 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Lagomorpha | Leporidae | Oryctolagus | Oryctolagus cuniculus | |
| 32127107 | 32127107 | PRJNA1168532_S_NODE_278758_length_177_cov_1.201493_g275815_i0 | PRJNA1168532 | 278758 | 177 | 1.201493 | 2.12664261 | Loxodonta africana | 9785 | Chordata | Chordata | 53.1 | 3.36e-6 | NR | XP_064138050.1 | 9785 | g275815 | i0 | 49 | 3.91525423728814 | 49 | 25 | 83.1 | 0 | 28 | 174 | 789 | 837 | XP_064138050.1 protein zyg-11 homolog B isoform X1 [Loxodonta africana] | diamond | 693 | 53.1 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Proboscidea | Elephantidae | Loxodonta | Loxodonta africana | |
| 32190253 | 32190253 | PRJNA1168532_S_NODE_187938_length_227_cov_3.635870_g184995_i0 | PRJNA1168532 | 187938 | 227 | 3.63587 | 8.2534249 | Diceros bicornis minor | 77932 | Chordata | Chordata | 45.4 | 0.00334 | NR | XP_058412502.1 | 77932 | g184995 | i0 | 84 | 0.330396475770925 | 25 | 3 | 31.7 | 1 | 83 | 12 | 15 | 39 | XP_058412502.1 LOW QUALITY PROTEIN: serine/threonine-protein kinase 24-like [Diceros bicornis minor] | diamond | 75 | 45.4 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Perissodactyla | Rhinocerotidae | Diceros | Diceros bicornis | |
| 32526171 | 32526171 | PRJNA1168532_S_NODE_337779_length_156_cov_1.371681_g334836_i0 | PRJNA1168532 | 337779 | 156 | 1.371681 | 2.13982236 | root | 1 | Root_unresolved | Root_unresolved | 87.8 | 1.47e-18 | NR | AAA39757.1 | 10090 | g334836 | i0 | 88 | 28.8461538461538 | 50 | 6 | 96.2 | 0 | 152 | 3 | 52 | 101 | AAA39757.1 pol protein, partial [Mus musculus] | diamond | 4500 | 88.6 | 0.99097065462754 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Muridae | Mus | Mus musculus | |
| 32695702 | 32695702 | PRJNA1168532_S_NODE_262040_length_184_cov_1.815603_g259097_i0 | PRJNA1168532 | 262040 | 184 | 1.815603 | 3.34070952 | Mesoplodon densirostris | 48708 | Chordata | Chordata | 62 | 1.26e-9 | NR | XP_059939792.1 | 48708 | g259097 | i0 | 49.2 | 0.994565217391304 | 61 | 29 | 96.2 | 1 | 2 | 178 | 8 | 68 | XP_059939792.1 zinc finger protein 580 isoform X1 [Mesoplodon densirostris] | diamond | 183 | 62 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Artiodactyla | Ziphiidae | Mesoplodon | Mesoplodon densirostris |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;