RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1168532" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1168532 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5418288 5418288 PRJNA1168532_S_NODE_9285_length_801_cov_2.121372_g7745_i0 PRJNA1168532 9285 801 2.121372 16.99218972 Fructilactobacillus sanfranciscensis 1625 Bacteria Bacteria 143 2.87e-39   NR POH17992.1 1625 g7745 i0 60.3 0.49063670411985 131 52 49.1 0 102 494 1 131 POH17992.1 hypothetical protein BGL45_06810 [Fructilactobacillus sanfranciscensis] diamond 393 143 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus sanfranciscensis
28146170 28146170 PRJNA1168532_S_NODE_232565_length_200_cov_0.885350_g229622_i0 PRJNA1168532 232565 200 0.88535 1.7707 Staphylococcus aureus 1280 Bacteria Bacteria 54.7 1.26e-6   NR QHG80002.1 1280 g229622 i0 50 1.02 68 28 99 3 198 1 297 360 QHG80002.1 hypothetical protein D7B62_12520 [Staphylococcus aureus] diamond 204 54.7 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;