RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1167252" and tax_phylum = "candidate division WOR-3"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • candidate division WOR-3 · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1167252 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27230081 27230081 PRJNA1167252_P_NODE_26503_length_247_cov_0.896552_g26230_i0 PRJNA1167252 26503 247 0.896552 2.21448344 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 134 4.98e-38   NR MEO0053468.1 2052148 g26230 i0 81 0.959514170040486 79 15 96 0 239 3 1 79 MEO0053468.1 DUF502 domain-containing protein [candidate division WOR-3 bacterium] diamond 237 134 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
27419995 27419995 PRJNA1167252_P_NODE_29523_length_242_cov_0.923077_g29250_i0 PRJNA1167252 29523 242 0.923077 2.23384634 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 105 1.09e-25   NR MEN9979625.1 2052148 g29250 i0 74.2 0.818181818181818 66 17 81.8 0 242 45 177 242 MEN9979625.1 type I-B CRISPR-associated protein Cas5b [candidate division WOR-3 bacterium] diamond 198 105 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
29914330 29914330 PRJNA1167252_P_NODE_25231_length_249_cov_0.886364_g24958_i0 PRJNA1167252 25231 249 0.886364 2.20704636 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 169 8.83e-47   NR NPV14705.1 2052148 g24958 i0 97.6 0.987951807228916 82 2 98.8 0 247 2 610 691 NPV14705.1 excinuclease ABC subunit UvrA [candidate division WOR-3 bacterium] diamond 246 169 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
31841958 31841958 PRJNA1167252_P_NODE_29257_length_242_cov_0.923077_g28984_i0 PRJNA1167252 29257 242 0.923077 2.23384634 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 110 3.66e-26   NR MEN9979263.1 2052148 g28984 i0 61.3 3.95454545454545 80 31 99.2 0 2 241 494 573 MEN9979263.1 PQQ-binding-like beta-propeller repeat protein [candidate division WOR-3 bacterium] diamond 957 110 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;