RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1167252" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1167252 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29692751 29692751 PRJNA1167252_P_NODE_23790_length_251_cov_0.876404_g23517_i0 PRJNA1167252 23790 251 0.876404 2.19977404 Thermofilaceae archaeon 2268203 Archaea Archaea 46.6 0.00181   NR MEM1667177.1 2268203 g23517 i0 38.7 0.741035856573705 62 36 72.9 2 196 14 220 280 MEM1667177.1 hypothetical protein [Thermofilaceae archaeon] diamond 186 46.6 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermofilales Thermofilaceae   Thermofilaceae archaeon
30546026 30546026 PRJNA1167252_P_NODE_23593_length_252_cov_0.871508_g23320_i0 PRJNA1167252 23593 252 0.871508 2.19620016 Candidatus Methanomethylicia archaeon 2268187 Archaea Archaea 168 2.7e-49   NR MCQ5376853.1 2268187 g23320 i0 92.9 1 84 6 100 0 1 252 178 261 MCQ5376853.1 4Fe-4S dicluster domain-containing protein [Candidatus Methanomethylicia archaeon] diamond 252 168 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia       Candidatus Methanomethylicia archaeon
30988500 30988500 PRJNA1167252_P_NODE_29614_length_242_cov_0.923077_g29341_i0 PRJNA1167252 29614 242 0.923077 2.23384634 Thermofilum sp. 1961369 Archaea Archaea 148 2.87e-44   NR WP_288005865.1 1961369 g29341 i0 86.3 0.991735537190083 80 11 99.2 0 241 2 28 107 WP_288005865.1 hypothetical protein [Thermofilum sp.] diamond 240 148 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermofilales Thermofilaceae Thermofilum Thermofilum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;