RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1167252" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1167252 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27640943 27640943 PRJNA1167252_P_NODE_26124_length_247_cov_1.609195_g25851_i0 PRJNA1167252 26124 247 1.609195 3.97471165 Scyliorhinus canicula 7830 Chordata Chordata 160 6.03e-48   NR XP_038652922.1 7830 g25851 i0 97.5 42.2550607287449 81 2 98.4 0 245 3 7 87 XP_038652922.1 60S ribosomal protein L13a isoform X2 [Scyliorhinus canicula] diamond 10437 160 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
28398531 28398531 PRJNA1167252_P_NODE_16146_length_305_cov_1.327586_g15873_i0 PRJNA1167252 16146 305 1.327586 4.0491373 Ranitomeya imitator 111125 Chordata Chordata 63.5 3.81e-9   NR CAJ0933392.1 111125 g15873 i0 62.5 0.472131147540984 48 16 45.2 1 31 168 53 100 CAJ0933392.1 unnamed protein product [Ranitomeya imitator] diamond 144 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;