RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1167252" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA1167252 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28556590 28556590 PRJNA1167252_P_NODE_26527_length_247_cov_0.896552_g26254_i0 PRJNA1167252 26527 247 0.896552 2.21448344 Thermotogaceae bacterium 2268206 Bacteria Bacteria 155 3.56e-46   NR NLI08025.1 2268206 g26254 i0 100 0.983805668016194 81 0 98.4 0 245 3 79 159 NLI08025.1 MerR family transcriptional regulator [Thermotogaceae bacterium] diamond 243 155 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae   Thermotogaceae bacterium
31051837 31051837 PRJNA1167252_P_NODE_28795_length_243_cov_0.917647_g28522_i0 PRJNA1167252 28795 243 0.917647 2.22988221 Synergistaceae bacterium 2053624 Bacteria Bacteria 156 1.43e-45   NR NLH95274.1 2053624 g28522 i0 96.3 1 81 3 100 0 243 1 48 128 NLH95274.1 kinase/pyrophosphorylase [Synergistaceae bacterium] diamond 243 156 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
31450306 31450306 PRJNA1167252_P_NODE_24696_length_250_cov_0.881356_g24423_i0 PRJNA1167252 24696 250 0.881356 2.20339 Thermaceae 188786 Bacteria Bacteria 119 3.5499999999999996e-30   NR WP_027877899.1 65552 g24423 i0 63.9 2.988 83 30 99.6 0 1 249 62 144 WP_027877899.1 glucose-1-phosphate thymidylyltransferase [Meiothermus cerbereus] diamond 747 119 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus cerbereus
32506802 32506802 PRJNA1167252_P_NODE_28159_length_244_cov_0.912281_g27886_i0 PRJNA1167252 28159 244 0.912281 2.22596564 Synergistaceae bacterium 2053624 Bacteria Bacteria 158 3.2e-47   NR NLI96877.1 2053624 g27886 i0 97.5 0.995901639344262 81 2 99.6 0 243 1 90 170 NLI96877.1 translation initiation factor IF-3 [Synergistaceae bacterium] diamond 243 158 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32853162 32853162 PRJNA1167252_P_NODE_26340_length_247_cov_0.896552_g26067_i0 PRJNA1167252 26340 247 0.896552 2.21448344 Trueperaceae bacterium 2026798 Bacteria Bacteria 112 5.440000000000001e-27   NR MBW6454337.1 2026798 g26067 i0 64.2 0.983805668016194 81 29 98.4 0 245 3 113 193 MBW6454337.1 hypothetical protein [Trueperaceae bacterium] diamond 243 112 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;