RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1167252" and tax_clade = "Caldisericota/Cryosericota group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Caldisericota/Cryosericota group · 3 ✖

bioproject 1

  • PRJNA1167252 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11243279 11243279 PRJNA1167252_P_NODE_28129_length_244_cov_0.912281_g27856_i0 PRJNA1167252 28129 244 0.912281 2.22596564 Caldisericia bacterium 2758719 Bacteria Bacteria 166 7.17e-50   NR HOC52988.1 2758719 g27856 i0 100 0.995901639344262 81 0 99.6 0 243 1 46 126 HOC52988.1 ribulose-phosphate 3-epimerase [Caldisericia bacterium] diamond 243 166 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia       Caldisericia bacterium
30072000 30072000 PRJNA1167252_P_NODE_29652_length_242_cov_0.863905_g29379_i0 PRJNA1167252 29652 242 0.863905 2.0906501 Caldisericia bacterium 2758719 Bacteria Bacteria 154 3.91e-43   NR HQN49191.1 2758719 g29379 i0 95 3.96694214876033 80 4 99.2 0 1 240 281 360 HQN49191.1 hypothetical protein [Caldisericia bacterium] diamond 960 154 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia       Caldisericia bacterium
32632576 32632576 PRJNA1167252_P_NODE_27660_length_245_cov_0.906977_g27387_i0 PRJNA1167252 27660 245 0.906977 2.22209365 Caldisericaceae bacterium 2820293 Bacteria Bacteria 149 1.3e-39   NR MCD6376393.1 2820293 g27387 i0 95.1 0.991836734693878 81 4 99.2 0 1 243 142 222 MCD6376393.1 efflux RND transporter permease subunit [Caldisericaceae bacterium] diamond 243 149 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia Caldisericales Caldisericaceae   Caldisericaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;