RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1166865" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1166865 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28714326 28714326 PRJNA1166865_P_NODE_92687_length_242_cov_0.911243_g92446_i0 PRJNA1166865 92687 242 0.911243 2.20520806 Mycoplasma sp. HU2 2108 Bacteria Bacteria 146 2.53e-39   NR WP_050517646.1 1664275 g92446 i0 98.7 0.942148760330578 76 1 94.2 0 229 2 58 133 WP_050517646.1 BMP family ABC transporter substrate-binding protein [Mycoplasma sp. HU2014] diamond 228 146 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. HU2014
29977263 29977263 PRJNA1166865_P_NODE_59491_length_287_cov_1.149533_g59250_i0 PRJNA1166865 59491 287 1.149533 3.29915971 Candidatus Moeniiplasma glomeromycotorum 1822367 Bacteria Bacteria 73.2 1.34e-13   NR MCE8162780.1 1822367 g59250 i0 49.2 0.616724738675958 59 29 60.6 1 6 179 82 140 MCE8162780.1 hypothetical protein [Candidatus Moeniiplasma glomeromycotorum] diamond 177 73.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Candidatus Moeniiplasma Candidatus Moeniiplasma glomeromycotorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;