RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1164198" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1164198 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27439255 27439255 PRJNA1164198_P_NODE_28563_length_246_cov_0.901734_g28294_i0 PRJNA1164198 28563 246 0.901734 2.21826564 Luteolibacter 518753 Bacteria Bacteria 95.5 1.04e-20   NR WP_200266655.1 454153 g28294 i0 63 1.8780487804878 81 29 97.6 1 5 244 30 110 WP_200266655.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor [Luteolibacter pohnpeiensis] diamond 462 95.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter pohnpeiensis
28777285 28777285 PRJNA1164198_P_NODE_6287_length_502_cov_1.247086_g6029_i0 PRJNA1164198 6287 502 1.247086 6.26037172 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 223 2.3999999999999996e-69   NR RYD65414.1 2026800 g6029 i0 71.7 0.99203187250996006 166 44 98.6 2 500 6 89 252 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 498 223 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29377291 29377291 PRJNA1164198_P_NODE_20169_length_276_cov_1.522167_g19900_i0 PRJNA1164198 20169 276 1.522167 4.20118092 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 45.1 0.00454   NR HEU5395808.1 2499141 g19900 i0 44.7 0.41304347826087 38 21 41.3 0 153 266 110 147 HEU5395808.1 DUF6600 domain-containing protein [Verrucomicrobiia bacterium] diamond 114 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
30893699 30893699 PRJNA1164198_P_NODE_27754_length_247_cov_0.896552_g27485_i0 PRJNA1164198 27754 247 0.896552 2.21448344 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 116 3.71e-28   NR MBN9693850.1 2026799 g27485 i0 86.4 0.801619433198381 66 9 80.2 0 3 200 279 344 MBN9693850.1 CHASE3 domain-containing protein [Verrucomicrobiota bacterium] diamond 198 116 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31272787 31272787 PRJNA1164198_P_NODE_25295_length_251_cov_0.876404_g25026_i0 PRJNA1164198 25295 251 0.876404 2.19977404 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 63.9 1.45e-9   NR MBI3878789.1 2026799 g25026 i0 46.9 2.54581673306773 81 43 96.8 0 7 249 2229 2309 MBI3878789.1 tandem-95 repeat protein [Verrucomicrobiota bacterium] diamond 639 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32127039 32127039 PRJNA1164198_P_NODE_25858_length_250_cov_0.881356_g25589_i0 PRJNA1164198 25858 250 0.881356 2.20339 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 106 3.96e-25   NR MBI5800971.1 2026799 g25589 i0 71.2 3.96 66 19 79.2 0 199 2 1 66 MBI5800971.1 glutathionylspermidine synthase family protein [Verrucomicrobiota bacterium] diamond 990 106 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;