RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1164198" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1164198 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28208883 28208883 PRJNA1164198_P_NODE_28946_length_245_cov_0.906977_g28677_i0 PRJNA1164198 28946 245 0.906977 2.22209365 Spirochaetota bacterium 2202144 Bacteria Bacteria 87 4.29e-18   NR NOY08952.1 2202144 g28677 i0 53.1 0.991836734693878 81 37 98 1 241 2 204 284 NOY08952.1 aspartate-semialdehyde dehydrogenase [Spirochaetota bacterium] diamond 243 87 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
28417966 28417966 PRJNA1164198_P_NODE_25006_length_252_cov_0.871508_g24737_i0 PRJNA1164198 25006 252 0.871508 2.19620016 Candidatus Ornithospirochaeta 2840653 Bacteria Bacteria 124 8.35e-31   NR MBO8468212.1 2840897 g24737 i0 74.7 1.97619047619048 83 21 98.8 0 251 3 48 130 MBO8468212.1 transcription elongation factor GreA [Candidatus Ornithospirochaeta stercoravium] diamond 498 124 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Candidatus Ornithospirochaeta Candidatus Ornithospirochaeta stercoravium
32285389 32285389 PRJNA1164198_P_NODE_27519_length_247_cov_1.511494_g27250_i0 PRJNA1164198 27519 247 1.511494 3.73339018 Treponema sp. 166 Bacteria Bacteria 41.2 0.0406   NR MBR1613865.1 166 g27250 i0 48.6 0.425101214574899 35 18 42.5 0 247 143 71 105 MBR1613865.1 CAP domain-containing protein [Treponema sp.] diamond 105 41.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;