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contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA1164198" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1164198 · 24 ✖

analysis 1

  • diamond · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5415015 5415015 PRJNA1164198_P_NODE_13465_length_337_cov_2.931818_g13196_i0 PRJNA1164198 13465 337 2.931818 9.88022666 Chordata 7711 Chordata Chordata 84.7 5.45e-18   NR KAB0345139.1 9888 g13196 i0 53.8 8.76854599406528 93 33 73.9 1 8 256 31 123 KAB0345139.1 hypothetical protein FD754_022065 [Muntiacus muntjak] diamond 2955 85.5 0.990643274853801 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
6689942 6689942 PRJNA1164198_P_NODE_30426_length_243_cov_0.917647_g30157_i0 PRJNA1164198 30426 243 0.917647 2.22988221 Chordata 7711 Chordata Chordata 148 2.31e-40   NR KAG2455313.1 55291 g30157 i0 81.5 86 81 15 100 0 1 243 182 262 KAG2455313.1 GBLP protein, partial [Polypterus senegalus] diamond 20898 149 0.993288590604027 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
21988660 21988660 PRJNA1164198_P_NODE_10478_length_384_cov_2.408360_g10210_i0 PRJNA1164198 10478 384 2.40836 9.2481024 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 180 4.3899999999999996e-54   NR CAM2101742.1 8467 g10210 i0 68.8 91.3828125 125 38 96.9 1 11 382 65 189 CAM2101742.1 unnamed protein product [Caretta caretta] diamond 35091 180 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
21988755 21988755 PRJNA1164198_P_NODE_7098_length_471_cov_2.472362_g6837_i0 PRJNA1164198 7098 471 2.472362 11.64482502 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 192 2.72e-59   NR KAK9406484.1 8729 g6837 i0 66.4 84.3566878980892 146 45 91.1 2 20 448 38 182 KAK9406484.1 hypothetical protein NXF25_005258 [Crotalus adamanteus] diamond 39732 193 0.994818652849741 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
26977098 26977098 PRJNA1164198_P_NODE_10042_length_392_cov_4.213166_g9775_i0 PRJNA1164198 10042 392 4.213166 16.51561072 Branchiostoma lanceolatum 7740 Chordata Chordata 97.4 3.919999999999999e-23   NR XP_066285211.1 7740 g9775 i0 41.6 0.956632653061224 125 71 94.1 1 2 370 2 126 XP_066285211.1 profilin-1A-like [Branchiostoma lanceolatum] diamond 375 97.4 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
26996238 26996238 PRJNA1164198_P_NODE_13162_length_341_cov_1.746269_g12893_i0 PRJNA1164198 13162 341 1.746269 5.95477729 Metazoa 33208 Chordata Chordata 82 1.64e-17   NR XP_005987634.1 7897 g12893 i0 50.6 3.34310850439883 77 38 67.7 0 329 99 1 77 XP_005987634.1 60S acidic ribosomal protein P2 [Latimeria chalumnae] diamond 1140 82 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
27470659 27470659 PRJNA1164198_P_NODE_18063_length_291_cov_1.431193_g17794_i0 PRJNA1164198 18063 291 1.431193 4.16477163 Mammalia 40674 Chordata Chordata 102 7.02e-25   NR XP_037679824.1 27675 g17794 i0 60.9 14.0412371134021 92 35 94.8 1 14 289 61 151 XP_037679824.1 40S ribosomal protein S15 [Choloepus didactylus] diamond 4086 102 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pilosa Megalonychidae Choloepus Choloepus didactylus
27502307 27502307 PRJNA1164198_P_NODE_22503_length_262_cov_1.142857_g22234_i0 PRJNA1164198 22503 262 1.142857 2.99428534 Chordata 7711 Chordata Chordata 98.6 7.99e-22   NR XP_069478496.1 8296 g22234 i0 48.3 12.9618320610687 87 45 99.6 0 261 1 374 460 XP_069478496.1 adenylyl cyclase-associated protein 1 [Ambystoma mexicanum] diamond 3396 98.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
28114185 28114185 PRJNA1164198_P_NODE_21905_length_266_cov_0.808290_g21636_i0 PRJNA1164198 21905 266 0.80829 2.1500514 Buphagus erythrorhynchus 245048 Chordata Chordata 46.6 1.27e-4   NR NXU06048.1 245048 g21636 i0 47.4 2.18796992481203 38 20 42.9 0 9 122 11 48 NXU06048.1 ZBT17 protein [Buphagus erythrorhynchus] diamond 582 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sturnidae Buphagus Buphagus erythrorhynchus
28828066 28828066 PRJNA1164198_P_NODE_2808_length_745_cov_2.127976_g2595_i0 PRJNA1164198 2808 745 2.127976 15.8534212 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 271 6.479999999999997e-88   NR AAZ38987.1 8668 g2595 i0 56.6 54.1731543624161 244 93 97 2 737 15 2 235 AAZ38987.1 40S ribosomal protein S2, partial [Oxyuranus scutellatus] diamond 40359 273 0.992673992673993 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Oxyuranus Oxyuranus scutellatus
28935331 28935331 PRJNA1164198_P_NODE_27688_length_247_cov_0.896552_g27419_i0 PRJNA1164198 27688 247 0.896552 2.21448344 Hyperolius riggenbachi 752182 Chordata Chordata 65.9 2.78e-10   NR XP_068115012.1 752182 g27419 i0 56.6 1.28744939271255 53 23 64.4 0 230 72 55 107 XP_068115012.1 guanylate cyclase 2G-like [Hyperolius riggenbachi] diamond 318 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
29049347 29049347 PRJNA1164198_P_NODE_26508_length_249_cov_0.886364_g26239_i0 PRJNA1164198 26508 249 0.886364 2.20704636 Bufonidae 8382 Chordata Chordata 89.7 1.14e-18   NR XP_044147138.1 30331 g26239 i0 51.9 8.68674698795181 81 39 97.6 0 3 245 215 295 XP_044147138.1 uncharacterized protein LOC122935434 [Bufo gargarizans] diamond 2163 90.1 0.995560488346282 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo gargarizans
29365068 29365068 PRJNA1164198_P_NODE_26109_length_250_cov_0.881356_g25840_i0 PRJNA1164198 26109 250 0.881356 2.20339 root 1 Root_unresolved Root_unresolved 55.1 9.71e-7   NR XP_070318000.1 9874 g25840 i0 57.4 3.024 54 22 63.6 1 248 90 44 97 XP_070318000.1 LINE-1 type transposase domain-containing protein 1 [Odocoileus virginianus] diamond 756 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Odocoileus Odocoileus virginianus
29471707 29471707 PRJNA1164198_P_NODE_28490_length_246_cov_0.901734_g28221_i0 PRJNA1164198 28490 246 0.901734 2.21826564 Heterodontus francisci 7792 Chordata Chordata 73.2 7.08e-13   NR XP_067908860.1 7792 g28221 i0 55.2 0.707317073170732 58 26 70.7 0 226 53 309 366 XP_067908860.1 ornithine decarboxylase-like [Heterodontus francisci] diamond 174 73.2 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
30040450 30040450 PRJNA1164198_P_NODE_17291_length_297_cov_1.602679_g17022_i0 PRJNA1164198 17291 297 1.602679 4.75995663 Chinchilla lanigera 34839 Chordata Chordata 43.5 0.0366   NR XP_013364948.1 34839 g17022 i0 60 0.353535353535354 35 14 35.4 0 184 288 350 384 XP_013364948.1 PREDICTED: LOW QUALITY PROTEIN: protein DEK [Chinchilla lanigera] diamond 105 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Chinchillidae Chinchilla Chinchilla lanigera
30609052 30609052 PRJNA1164198_P_NODE_27093_length_248_cov_0.891429_g26824_i0 PRJNA1164198 27093 248 0.891429 2.21074392 Alligator mississippiensis 8496 Chordata Chordata 45.4 0.00449   NR XP_059586823.1 8496 g26824 i0 58.3 0.834677419354839 36 14 42.3 1 3 107 59 94 XP_059586823.1 espin-like protein isoform X3 [Alligator mississippiensis] diamond 207 45.8 0.991266375545852 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
30767164 30767164 PRJNA1164198_P_NODE_17234_length_298_cov_1.031111_g16965_i0 PRJNA1164198 17234 298 1.0311110000000001 3.07271078 Hyperolius riggenbachi 752182 Chordata Chordata 58.9 1.48e-7   NR XP_068115012.1 752182 g16965 i0 51 2.00335570469799 51 25 51.3 0 158 6 57 107 XP_068115012.1 guanylate cyclase 2G-like [Hyperolius riggenbachi] diamond 597 58.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
30893693 30893693 PRJNA1164198_P_NODE_19734_length_279_cov_1.184466_g19465_i0 PRJNA1164198 19734 279 1.184466 3.30466014 Eublepharis macularius 481883 Chordata Chordata 62.8 5.2e-9   NR XP_054846670.1 481883 g19465 i0 39.4 5.34408602150538 71 43 76.3 0 3 215 83 153 XP_054846670.1 serine/threonine-protein kinase MRCK gamma isoform X4 [Eublepharis macularius] diamond 1491 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Eublepharidae Eublepharis Eublepharis macularius
31196762 31196762 PRJNA1164198_P_NODE_14315_length_327_cov_1.535433_g14046_i0 PRJNA1164198 14315 327 1.535433 5.02086591 Passeriformes 9126 Chordata Chordata 106 1.17e-26   NR XP_016157899.1 59894 g14046 i0 59.1 13.6422018348624 93 38 85.3 0 324 46 57 149 XP_016157899.1 PREDICTED: 60S ribosomal protein L35 [Ficedula albicollis] diamond 4461 107 0.990654205607477 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Muscicapidae Ficedula Ficedula albicollis
31557646 31557646 PRJNA1164198_P_NODE_30696_length_242_cov_0.923077_g30427_i0 PRJNA1164198 30696 242 0.923077 2.23384634 Emys orbicularis 82168 Chordata Chordata 45.4 0.00427   NR XP_065276831.1 82168 g30427 i0 60.6 3.60743801652893 33 13 40.9 0 105 7 822 854 XP_065276831.1 LOW QUALITY PROTEIN: uncharacterized protein LOC135892976, partial [Emys orbicularis] diamond 873 45.8 0.991266375545852 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Emys Emys orbicularis
31620628 31620628 PRJNA1164198_P_NODE_21996_length_265_cov_1.447917_g21727_i0 PRJNA1164198 21996 265 1.447917 3.83698005 Mus musculus 10090 Chordata Chordata 44.3 0.012   NR BAC28802.1 10090 g21727 i0 38.9 0.815094339622642 72 42 81.5 1 46 261 131 200 BAC28802.1 unnamed protein product, partial [Mus musculus] diamond 216 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31841901 31841901 PRJNA1164198_P_NODE_30317_length_243_cov_0.917647_g30048_i0 PRJNA1164198 30317 243 0.917647 2.22988221 Phacochoerus africanus 41426 Chordata Chordata 45.8 0.00278   NR XP_047654103.1 41426 g30048 i0 55 0.493827160493827 40 18 49.4 0 167 48 175 214 XP_047654103.1 translation initiation factor IF-2-like [Phacochoerus africanus] diamond 120 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Phacochoerus Phacochoerus africanus
32051222 32051222 PRJNA1164198_P_NODE_24998_length_252_cov_0.871508_g24729_i0 PRJNA1164198 24998 252 0.871508 2.19620016 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.8 7.18e-4   NR NP_001072831.1 8364 g24729 i0 58.6 2.27380952380952 29 12 34.5 0 166 252 40 68 NP_001072831.1 adenine DNA glycosylase [Xenopus tropicalis] diamond 573 48.1 0.993762993762994 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
32853117 32853117 PRJNA1164198_P_NODE_29680_length_244_cov_0.912281_g29411_i0 PRJNA1164198 29680 244 0.912281 2.22596564 Rana temporaria 8407 Chordata Chordata 45.1 0.00569   NR XP_040185054.1 8407 g29411 i0 30.5 1.90573770491803 82 53 95.9 2 240 7 106 187 XP_040185054.1 5-hydroxytryptamine receptor 3A-like [Rana temporaria] diamond 465 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;