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contig_metadata

27 rows where analysis = "diamond", bioproject = "PRJNA1164198" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 27 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1164198 · 27 ✖

analysis 1

  • diamond · 27 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10515628 10515628 PRJNA1164198_P_NODE_26429_length_249_cov_0.886364_g26160_i0 PRJNA1164198 26429 249 0.886364 2.20704636 Brachybacterium muris 219301 Bacteria Bacteria 149 2.4199999999999998e-42   NR WP_017822414.1 219301 g26160 i0 90.2 0.987951807228916 82 8 98.8 0 247 2 25 106 WP_017822414.1 DUF3097 domain-containing protein [Brachybacterium muris] diamond 246 149 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium muris
13065608 13065608 PRJNA1164198_P_NODE_30811_length_242_cov_0.923077_g30542_i0 PRJNA1164198 30811 242 0.923077 2.23384634 Kineococcus rubinsiae 2609562 Bacteria Bacteria 135 5.519999999999999e-35   NR WP_167587486.1 2609562 g30542 i0 86.3 0.991735537190083 80 11 99.2 0 3 242 444 523 WP_167587486.1 glycoside hydrolase family 3 protein [Kineococcus rubinsiae] diamond 240 135 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Kineococcus Kineococcus rubinsiae
16889104 16889104 PRJNA1164198_P_NODE_29714_length_244_cov_0.912281_g29445_i0 PRJNA1164198 29714 244 0.912281 2.22596564 Aeromicrobium sp. Root472D3 1736540 Bacteria Bacteria 155 9.429999999999997e-43   NR WP_056602979.1 1736540 g29445 i0 96.3 0.995901639344262 81 3 99.6 0 243 1 141 221 WP_056602979.1 amino acid permease [Aeromicrobium sp. Root472D3] diamond 243 155 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium sp. Root472D3
20713343 20713343 PRJNA1164198_P_NODE_28537_length_246_cov_0.901734_g28268_i0 PRJNA1164198 28537 246 0.901734 2.21826564 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 100 9.84e-24   NR MET0695756.1 2021380 g28268 i0 88.5 0.74390243902439 61 7 74.4 0 64 246 6 66 MET0695756.1 IclR family transcriptional regulator [Propionibacteriaceae bacterium] diamond 183 100 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
26596955 26596955 PRJNA1164198_P_NODE_29241_length_244_cov_5.479532_g28972_i0 PRJNA1164198 29241 244 5.479532 13.37005808 Actinomycetospora flava 3129232 Bacteria Bacteria 43.5 0.0181   NR WP_337703644.1 3129232 g28972 i0 44.6 0.799180327868853 65 29 71.3 2 229 56 34 98 WP_337703644.1 CPBP family intramembrane glutamic endopeptidase [Actinomycetospora flava] diamond 195 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora Actinomycetospora flava
26996239 26996239 PRJNA1164198_P_NODE_27922_length_247_cov_0.896552_g27653_i0 PRJNA1164198 27922 247 0.896552 2.21448344 Bacteria 2 Bacteria Bacteria 42.7 0.0242   NR WP_395474882.1 60894 g27653 i0 34.1 1.61538461538462 85 41 85 3 218 9 74 158 WP_395474882.1 hypothetical protein [Saccharopolyspora spinosa] diamond 399 43.1 0.990719257540603 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora spinosa
28051159 28051159 PRJNA1164198_P_NODE_27125_length_248_cov_0.891429_g26856_i0 PRJNA1164198 27125 248 0.891429 2.21074392 Actinomycetota bacterium 2900548 Bacteria Bacteria 110 1.3e-27   NR NCX04458.1 2900548 g26856 i0 59.8 1.98387096774194 82 33 99.2 0 2 247 42 123 NCX04458.1 hypothetical protein [Actinomycetota bacterium] diamond 492 110 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28872019 28872019 PRJNA1164198_P_NODE_4848_length_570_cov_1.545272_g4599_i0 PRJNA1164198 4848 570 1.545272 8.8080504 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 50.8 0.0012   NR MCZ7531284.1 2080302 g4599 i0 35.5 0.726315789473684 138 77 67.9 5 4 390 392 526 MCZ7531284.1 hypothetical protein [Acidimicrobiia bacterium] diamond 414 50.8 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
28903461 28903461 PRJNA1164198_P_NODE_25868_length_250_cov_0.881356_g25599_i0 PRJNA1164198 25868 250 0.881356 2.20339 Mycetocola zhadangensis 1164595 Bacteria Bacteria 139 1.18e-38   NR WP_416279446.1 1164595 g25599 i0 100 0.792 66 0 79.2 0 249 52 210 275 WP_416279446.1 helix-turn-helix transcriptional regulator [Mycetocola zhadangensis] diamond 198 139 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Mycetocola Mycetocola zhadangensis
29093288 29093288 PRJNA1164198_P_NODE_31648_length_229_cov_2.897436_g31379_i0 PRJNA1164198 31648 229 2.897436 6.63512844 Corynebacterium rouxii 2719119 Bacteria Bacteria 43.5 0.0105   NR VZH86393.1 2719119 g31379 i0 48.1 0.681222707423581 52 27 68.1 0 61 216 114 165 VZH86393.1 hypothetical protein FRC0190_02303 [Corynebacterium rouxii] diamond 156 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium rouxii
29408803 29408803 PRJNA1164198_P_NODE_30889_length_242_cov_0.923077_g30620_i0 PRJNA1164198 30889 242 0.923077 2.23384634 Lawsonella clevelandensis 1528099 Bacteria Bacteria 54.7 9.11e-8   NR WP_303678830.1 1528099 g30620 i0 100 0.297520661157025 24 0 29.8 0 1 72 44 67 WP_303678830.1 type II toxin-antitoxin system HicB family antitoxin [Lawsonella clevelandensis] diamond 72 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
29471696 29471696 PRJNA1164198_P_NODE_10910_length_376_cov_2.333333_g10642_i0 PRJNA1164198 10910 376 2.333333 8.77333208 Cellulomonas sp. NTE-D12 2962632 Bacteria Bacteria 44.7 0.027   NR WP_337974423.1 2962632 g10642 i0 26.9 0.861702127659574 108 70 82.2 3 8 316 95 198 WP_337974423.1 VIT1/CCC1 transporter family protein [Cellulomonas sp. NTE-D12] diamond 324 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. NTE-D12
29597972 29597972 PRJNA1164198_P_NODE_30030_length_243_cov_1.141176_g29761_i0 PRJNA1164198 30030 243 1.141176 2.77305768 Streptomyces hilarionis 2839954 Bacteria Bacteria 43.5 0.0187   NR MCQ9136224.1 2839954 g29761 i0 51.2 1.06172839506173 43 20 53.1 1 69 197 147 188 MCQ9136224.1 serine/threonine protein kinase [Streptomyces hilarionis] diamond 258 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces hilarionis
29914273 29914273 PRJNA1164198_P_NODE_17591_length_295_cov_0.824324_g17322_i0 PRJNA1164198 17591 295 0.824324 2.4317558 unclassified Streptomyces 2593676 Bacteria Bacteria 43.9 0.0235   NR WP_329425863.1 2593676 g17322 i0 38.3 0.955932203389831 94 32 84.4 5 271 23 63 141 WP_329425863.1 MULTISPECIES: ABC transporter ATP-binding protein [unclassified Streptomyces] diamond 282 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
29945788 29945788 PRJNA1164198_P_NODE_19831_length_278_cov_1.765854_g19562_i0 PRJNA1164198 19831 278 1.765854 4.90907412 Micrococcales bacterium 2026762 Bacteria Bacteria 101 1.5000000000000002e-22   NR MCE1180104.1 2026762 g19562 i0 51.1 1.96402877697842 90 44 97.1 0 4 273 47 136 MCE1180104.1 neutral/alkaline ceramidase [Micrococcales bacterium] diamond 546 101 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales     Micrococcales bacterium
30040454 30040454 PRJNA1164198_P_NODE_20711_length_273_cov_0.950000_g20442_i0 PRJNA1164198 20711 273 0.95 2.5935 Streptomyces sp. NPDC 1931 Bacteria Bacteria 43.9 0.0205   NR WP_361624954.1 3155377 g20442 i0 35.2 0.593406593406593 54 29 57.1 2 162 7 236 285 WP_361624954.1 exo-alpha-sialidase [Streptomyces sp. NPDC046985] diamond 162 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC046985
30249536 30249536 PRJNA1164198_P_NODE_5612_length_531_cov_2.262009_g5357_i0 PRJNA1164198 5612 531 2.262009 12.01126779 Bacteria 2 Bacteria Bacteria 119 4.1e-30   NR WP_069174204.1 1911 g5357 i0 48.6 8.07909604519774 142 67 77.4 3 530 120 27 167 WP_069174204.1 TerD family protein [Streptomyces griseus] diamond 4290 120 0.991666666666667 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseus
30451440 30451440 PRJNA1164198_P_NODE_15393_length_315_cov_2.247934_g15124_i0 PRJNA1164198 15393 315 2.247934 7.0809921 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 46.2 0.00118   NR GIT46276.1 2201156 g15124 i0 36.4 0.838095238095238 88 53 81 2 17 271 20 107 GIT46276.1 MAG: hypothetical protein Ct9H300mP12_08610 [Acidimicrobiales bacterium] diamond 264 46.2 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
30798628 30798628 PRJNA1164198_P_NODE_19554_length_280_cov_1.507246_g19285_i0 PRJNA1164198 19554 280 1.507246 4.2202888 Arthrobacter sp. B18 589273 Bacteria Bacteria 181 2.5199999999999997e-56   NR WP_104118423.1 2058892 g19285 i0 91.4 2.98928571428571 93 8 99.6 0 2 280 85 177 WP_104118423.1 hypothetical protein [Arthrobacter sp. B1805] diamond 837 181 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. B1805
31019995 31019995 PRJNA1164198_P_NODE_26575_length_249_cov_0.886364_g26306_i0 PRJNA1164198 26575 249 0.886364 2.20704636 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 144 2.34e-42   NR HEX8488088.1 2021380 g26306 i0 91.3 0.963855421686747 80 7 96.4 0 240 1 1 80 HEX8488088.1 Lrp/AsnC family transcriptional regulator [Propionibacteriaceae bacterium] diamond 240 144 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
31177614 31177614 PRJNA1164198_P_NODE_24455_length_253_cov_0.866667_g24186_i0 PRJNA1164198 24455 253 0.866667 2.19266751 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 109 1.19e-27   NR HEV7176722.1 2586742 g24186 i0 65.4 0.924901185770751 78 26 91.3 1 245 15 55 132 HEV7176722.1 class I SAM-dependent methyltransferase [Solirubrobacteraceae bacterium] diamond 234 109 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
31873673 31873673 PRJNA1164198_P_NODE_30077_length_243_cov_0.917647_g29808_i0 PRJNA1164198 30077 243 0.917647 2.22988221 Sediminivirga luteola 1774748 Bacteria Bacteria 167 1.7999999999999998e-48   NR WP_242136460.1 1774748 g29808 i0 88.8 0.987654320987654 80 9 98.8 0 242 3 87 166 WP_242136460.1 IS1249 family transposase [Sediminivirga luteola] diamond 240 167 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Sediminivirga Sediminivirga luteola
31956170 31956170 PRJNA1164198_P_NODE_18097_length_291_cov_1.288991_g17828_i0 PRJNA1164198 18097 291 1.288991 3.75096381 Nocardioides 1839 Bacteria Bacteria 114 7.91e-30   NR EGD45623.1 408672 g17828 i0 55.6 2.94845360824742 90 40 92.8 0 22 291 28 117 EGD45623.1 hypothetical protein NBCG_00100 [Nocardioidaceae bacterium Broad-1] diamond 858 115 0.991304347826087 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae   Nocardioidaceae bacterium Broad-1
32063471 32063471 PRJNA1164198_P_NODE_29058_length_245_cov_0.906977_g28789_i0 PRJNA1164198 29058 245 0.906977 2.22209365 Microbacterium sp. Clip185 3025663 Bacteria Bacteria 87.8 4.28e-18   NR WP_274287301.1 3025663 g28789 i0 91.5 1.15102040816327 47 4 57.6 0 104 244 1 47 WP_274287301.1 cell division initiation protein [Microbacterium sp. Clip185] diamond 282 87.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Clip185
32095189 32095189 PRJNA1164198_P_NODE_23498_length_256_cov_1.322404_g23229_i0 PRJNA1164198 23498 256 1.322404 3.38535424 Kitasatospora sp. GAS2 1871188 Bacteria Bacteria 43.5 0.0227   NR WP_280693357.1 3035283 g23229 i0 32.8 0.75 64 43 75 0 249 58 148 211 WP_280693357.1 c-type cytochrome biogenesis protein CcsB [Kitasatospora sp. GAS204B] diamond 192 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. GAS204B
32209474 32209474 PRJNA1164198_P_NODE_30258_length_243_cov_0.917647_g29989_i0 PRJNA1164198 30258 243 0.917647 2.22988221 Ilumatobacter 682522 Bacteria Bacteria 103 1.4599999999999995e-23   NR HUF98948.1 1967498 g29989 i0 63.3 3.90123456790123 79 29 97.5 0 5 241 834 912 HUF98948.1 indolepyruvate ferredoxin oxidoreductase family protein [Ilumatobacter sp.] diamond 948 104 0.990384615384615 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae Ilumatobacter Ilumatobacter sp.
32317002 32317002 PRJNA1164198_P_NODE_26139_length_250_cov_0.881356_g25870_i0 PRJNA1164198 26139 250 0.881356 2.20339 Kocuria marina 223184 Bacteria Bacteria 174 2.8999999999999997e-48   NR WP_121544325.1 223184 g25870 i0 97.6 0.984 82 2 98.4 0 3 248 212 293 WP_121544325.1 ATP-binding protein [Kocuria marina] diamond 246 174 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;