RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1164198" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA1164198 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18163562 18163562 PRJNA1164198_P_NODE_20355_length_275_cov_1.158416_g20086_i0 PRJNA1164198 20355 275 1.158416 3.185644 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 75.5 1.38e-13   NR XP_013762925.1 461836 g20086 i0 52.3 0.709090909090909 65 30 70.9 1 270 76 269 332 XP_013762925.1 cruzipain [Thecamonas trahens ATCC 50062] diamond 195 75.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28998748 28998748 PRJNA1164198_P_NODE_25928_length_250_cov_0.881356_g25659_i0 PRJNA1164198 25928 250 0.881356 2.20339 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 102 1.42e-23   NR XP_013762925.1 461836 g25659 i0 53.8 2.952 80 36 96 1 250 11 248 326 XP_013762925.1 cruzipain [Thecamonas trahens ATCC 50062] diamond 738 102 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31810446 31810446 PRJNA1164198_P_NODE_16857_length_301_cov_1.368421_g16588_i0 PRJNA1164198 16857 301 1.368421 4.11894721 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 67 1.98e-10   NR XP_013761652.1 461836 g16588 i0 35.7 0.976744186046512 98 57 96.7 2 297 7 245 337 XP_013761652.1 glutaredoxin family protein [Thecamonas trahens ATCC 50062] diamond 294 67 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;