RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1160211" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1160211 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27830093 27830093 PRJNA1160211_S_NODE_255444_length_257_cov_3.489130_g254211_i0 PRJNA1160211 255444 257 3.48913 8.9670641 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 92.8 6.49e-20   NR HET9805429.1 2169593 g254211 i0 91.7 1.68093385214008 48 4 56 0 22 165 293 340 HET9805429.1 enolase [Nitrososphaeraceae archaeon] diamond 432 92.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
29282359 29282359 PRJNA1160211_S_NODE_7209_length_874_cov_15.579276_g6547_i0 PRJNA1160211 7209 874 15.579276 136.16287224 Candidatus Nitrosocosmicus sp. 2109671 Archaea Archaea 133 1.7599999999999998e-31   NR HYP42518.1 2109671 g6547 i0 60.5 0.391304347826087 114 45 39.1 0 532 191 56 169 HYP42518.1 hypothetical protein [Candidatus Nitrosocosmicus sp.] diamond 342 133 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus sp.
32051217 32051217 PRJNA1160211_S_NODE_32678_length_639_cov_11.192580_g31569_i0 PRJNA1160211 32678 639 11.19258 71.5205862 root 1 Root_unresolved Root_unresolved 152 5.51e-41   NR MCD6036617.1 2169593 g31569 i0 45.5 3.51643192488263 187 92 87.8 5 12 572 162 338 MCD6036617.1 yhdN 2 [Nitrososphaeraceae archaeon] diamond 2247 153 0.993464052287582 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;