RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA1160211" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 22 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1160211 · 22 ✖

analysis 1

  • diamond · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11788226 11788226 PRJNA1160211_S_NODE_183470_length_330_cov_3.167315_g182237_i0 PRJNA1160211 183470 330 3.167315 10.4521395 Roseiflexaceae bacterium 2762507 Bacteria Bacteria 125 8.159999999999999e-32   NR MFL5801539.1 2762507 g182237 i0 64.2 0.990909090909091 109 38 98.2 1 7 330 54 162 MFL5801539.1 YihY/virulence factor BrkB family protein [Roseiflexaceae bacterium] diamond 327 125 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae   Roseiflexaceae bacterium
27609213 27609213 PRJNA1160211_S_NODE_167444_length_350_cov_68.541516_g166211_i0 PRJNA1160211 167444 350 68.541516 239.895306 Caldilineaceae bacterium 2614250 Bacteria Bacteria 160 1.1399999999999999e-46   NR MCC6453881.1 2614250 g166211 i0 93.2 0.754285714285714 88 6 75.4 0 78 341 1 88 MCC6453881.1 FadR family transcriptional regulator [Caldilineaceae bacterium] diamond 264 160 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
27956466 27956466 PRJNA1160211_S_NODE_175985_length_339_cov_11.203008_g174752_i0 PRJNA1160211 175985 339 11.203008 37.97819712 Chloroflexota bacterium 2026724 Bacteria Bacteria 42.7 0.011   NR MFM8368687.1 2026724 g174752 i0 40 0.619469026548673 70 31 61.1 3 74 280 3 62 MFM8368687.1 DUF4491 family protein [Chloroflexota bacterium] diamond 210 42.7 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28366715 28366715 PRJNA1160211_S_NODE_167066_length_351_cov_3.748201_g165833_i0 PRJNA1160211 167066 351 3.748201 13.15618551 Candidatus Limnocylindria bacterium 3047546 Bacteria Bacteria 45.8 0.00919   NR HET8587534.1 3047546 g165833 i0 38.7 0.641025641025641 75 31 52.1 3 110 292 178 251 HET8587534.1 pirin family protein [Candidatus Limnocylindria bacterium] diamond 225 45.8 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria       Candidatus Limnocylindria bacterium
28682813 28682813 PRJNA1160211_S_NODE_190307_length_322_cov_2.144578_g189074_i0 PRJNA1160211 190307 322 2.144578 6.90554116 Chloroflexota bacterium 2026724 Bacteria Bacteria 61.2 2.51e-8   NR MBI3176740.1 2026724 g189074 i0 47.6 2.64596273291925 63 30 58.7 2 72 260 211 270 MBI3176740.1 M4 family metallopeptidase [Chloroflexota bacterium] diamond 852 61.2 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29061656 29061656 PRJNA1160211_S_NODE_134108_length_398_cov_12.240000_g132876_i0 PRJNA1160211 134108 398 12.24 48.7152 Ardenticatenaceae bacterium 2614247 Bacteria Bacteria 201 3.83e-64   NR MCB9430965.1 2614247 g132876 i0 86.8 0.85929648241206 114 15 85.9 0 343 2 1 114 MCB9430965.1 profilin [Ardenticatenaceae bacterium] diamond 342 201 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Ardenticatenales Ardenticatenaceae   Ardenticatenaceae bacterium
29314099 29314099 PRJNA1160211_S_NODE_107169_length_443_cov_16.908108_g105941_i0 PRJNA1160211 107169 443 16.908108 74.90291844 Caldilineaceae bacterium 2614250 Bacteria Bacteria 79.3 5.7e-14   NR MCC6455685.1 2614250 g105941 i0 60.7 0.413092550790068 61 24 41.3 0 184 2 877 937 MCC6455685.1 PKD domain-containing protein [Caldilineaceae bacterium] diamond 183 79.3 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
29314127 29314127 PRJNA1160211_S_NODE_292089_length_228_cov_7.896774_g290856_i0 PRJNA1160211 292089 228 7.896774 18.00464472 Caldilineaceae bacterium 2614250 Bacteria Bacteria 80.1 2.1e-15   NR MCC6456798.1 2614250 g290856 i0 65.7 0.881578947368421 67 23 88.2 0 23 223 733 799 MCC6456798.1 DUF4157 domain-containing protein [Caldilineaceae bacterium] diamond 201 80.1 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
29503404 29503404 PRJNA1160211_S_NODE_167470_length_350_cov_21.837545_g166237_i0 PRJNA1160211 167470 350 21.837545 76.4314075 Caldilineaceae bacterium 2614250 Bacteria Bacteria 136 1.43e-35   NR MCC6458350.1 2614250 g166237 i0 72.3 0.805714285714286 94 26 80.6 0 309 28 73 166 MCC6458350.1 Fe-S cluster assembly protein SufD [Caldilineaceae bacterium] diamond 282 136 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
30009003 30009003 PRJNA1160211_S_NODE_10031_length_816_cov_1.979812_g9250_i0 PRJNA1160211 10031 816 1.979812 16.15526592 Litorilinea sp. 2838787 Bacteria Bacteria 125 3.08e-29   NR MEX1021324.1 2838787 g9250 i0 60.2 0.397058823529412 108 40 38.6 1 245 559 107 214 MEX1021324.1 hypothetical protein [Litorilinea sp.] diamond 324 125 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Litorilinea Litorilinea sp.
30533590 30533590 PRJNA1160211_S_NODE_15253_length_748_cov_8.745185_g14346_i0 PRJNA1160211 15253 748 8.745185 65.4139838 Bacteria 2 Bacteria Bacteria 126 2.25e-33   NR HEY4691329.1 2052143 g14346 i0 69.5 0.653743315508021 82 25 32.9 0 482 237 1 82 HEY4691329.1 hypothetical protein [Anaerolineae bacterium] diamond 489 126 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
31165248 31165248 PRJNA1160211_S_NODE_160475_length_360_cov_3.261324_g159242_i0 PRJNA1160211 160475 360 3.261324 11.7407664 Bacteria 2 Bacteria Bacteria 129 8.95e-34   NR HEY1014469.1 2720503 g159242 i0 70.1 5.23333333333333 87 26 72.5 0 263 3 13 99 HEY1014469.1 aldo/keto reductase [Herpetosiphonaceae bacterium] diamond 1884 129 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae   Herpetosiphonaceae bacterium
31462700 31462700 PRJNA1160211_S_NODE_14676_length_754_cov_7.481645_g13779_i0 PRJNA1160211 14676 754 7.481645 56.4116033 Chloroflexia bacterium 2448782 Bacteria Bacteria 287 5.19e-95   NR NJO88251.1 2448782 g13779 i0 70.1 1.54774535809019 194 58 77.2 0 586 5 1 194 NJO88251.1 class I SAM-dependent methyltransferase [Chloroflexia bacterium] diamond 1167 287 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium
31620614 31620614 PRJNA1160211_S_NODE_94016_length_469_cov_3.994949_g92791_i0 PRJNA1160211 94016 469 3.994949 18.73631081 Chloroflexota bacterium 2026724 Bacteria Bacteria 48.9 0.00205   NR MBO9368753.1 2026724 g92791 i0 34.2 0.466950959488273 73 46 46.7 1 214 432 59 129 MBO9368753.1 hypothetical protein [Chloroflexota bacterium] diamond 219 48.9 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31778717 31778717 PRJNA1160211_S_NODE_35697_length_626_cov_44.965642_g34573_i0 PRJNA1160211 35697 626 44.965642 281.48491892 Caldilineaceae bacterium 2614250 Bacteria Bacteria 157 1.08e-40   NR MCC6454305.1 2614250 g34573 i0 72.3 0.536741214057508 112 30 53.2 1 291 623 1 112 MCC6454305.1 fasciclin domain-containing protein [Caldilineaceae bacterium] diamond 336 157 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
31810423 31810423 PRJNA1160211_S_NODE_290717_length_230_cov_8.356688_g289484_i0 PRJNA1160211 290717 230 8.356688 19.2203824 Caldilineaceae bacterium 2614250 Bacteria Bacteria 137 1.31e-35   NR MCC6458543.1 2614250 g289484 i0 93.8 0.834782608695652 64 4 83.5 0 204 13 222 285 MCC6458543.1 radical SAM protein [Caldilineaceae bacterium] diamond 192 137 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
31829552 31829552 PRJNA1160211_S_NODE_100457_length_456_cov_6.577023_g99231_i0 PRJNA1160211 100457 456 6.577023 29.99122488 Bacteria 2 Bacteria Bacteria 77 4.08e-13   NR MCI0578428.1 2026724 g99231 i0 43.5 1.31578947368421 108 57 71.1 3 381 58 534 637 MCI0578428.1 choice-of-anchor B family protein [Chloroflexota bacterium] diamond 600 77 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31841874 31841874 PRJNA1160211_S_NODE_3637_length_1020_cov_3.068638_g3167_i0 PRJNA1160211 3637 1020 3.068638 31.3001076 Anaerolineales bacterium 2073117 Bacteria Bacteria 291 1.4e-94   NR HEX2990329.1 2073117 g3167 i0 77.5 1.05 178 40 52.4 0 1005 472 70 247 HEX2990329.1 glycosyltransferase [Anaerolineales bacterium] diamond 1071 291 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
32316961 32316961 PRJNA1160211_S_NODE_182959_length_331_cov_1.193798_g181726_i0 PRJNA1160211 182959 331 1.193798 3.95147138 Chloroflexota bacterium 2026724 Bacteria Bacteria 177 9.6e-51   NR MEO1289171.1 2026724 g181726 i0 85.7 0.95166163141994 105 15 95.2 0 15 329 172 276 MEO1289171.1 branched-chain amino acid ABC transporter permease [Chloroflexota bacterium] diamond 315 177 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32570023 32570023 PRJNA1160211_S_NODE_129679_length_405_cov_7.572289_g128447_i0 PRJNA1160211 129679 405 7.572289 30.66777045 Anaerolineales bacterium 2073117 Bacteria Bacteria 175 2.82e-48   NR MCA9969888.1 2073117 g128447 i0 71.7 0.940740740740741 127 36 94.1 0 381 1 290 416 MCA9969888.1 STAS domain-containing protein [Anaerolineales bacterium] diamond 381 175 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
32789943 32789943 PRJNA1160211_S_NODE_181940_length_332_cov_1.949807_g180707_i0 PRJNA1160211 181940 332 1.949807 6.47335924 Anaerolineae bacterium 2052143 Bacteria Bacteria 52.8 3.36e-5   NR MCB0191143.1 2052143 g180707 i0 52.1 0.433734939759036 48 20 40.7 1 332 198 137 184 MCB0191143.1 glycosyltransferase [Anaerolineae bacterium] diamond 144 52.8 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
32821629 32821629 PRJNA1160211_S_NODE_208140_length_302_cov_0.873362_g206907_i0 PRJNA1160211 208140 302 0.873362 2.63755324 Caldilineaceae bacterium 2614250 Bacteria Bacteria 46.2 0.00476   NR MBW7884137.1 2614250 g206907 i0 39.1 2.50331125827815 69 41 68.5 1 88 294 3372 3439 MBW7884137.1 carboxypeptidase regulatory-like domain-containing protein [Caldilineaceae bacterium] diamond 756 46.2 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;